View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1179_low_1 (Length: 515)
Name: NF1179_low_1
Description: NF1179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1179_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 30276605 - 30277081
Alignment:
| Q |
1 |
taagagcttctaattcgcttggcggagatggtacgacaaaatctatagattcttcaagggttgagtttatggacaatatcttaggatatatgcgatcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276605 |
taagagcttctaattcgcttggcggagatggtacgacaaaatctatagattcttcaagggttgagtttatggacaatatcttaggatatatgcgatcttt |
30276704 |
T |
|
| Q |
101 |
aagatctttgactaacatttgatgggataagaagtgactttctaggtgcacaagctcattttccactcctgtcacttcctctagtattctacacatgaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30276705 |
aagatctttgactaacatttgatgggataagaagtgattctctaagtgcacaagctcattctccactcctgtcacttcctctagtattctacacatgaga |
30276804 |
T |
|
| Q |
201 |
aaacaaagataagtacctcaacattatatgccattcaacaataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaa |
300 |
Q |
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| T |
30276805 |
aaacaaagataagtacctcaacattatatgccattcaacaataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaa |
30276904 |
T |
|
| Q |
301 |
catgcaggaatatccttcataaacatgaatgaacaatactagtccttcactttttataagcccctttgatacttttcacatatggagtattaagaaaagt |
400 |
Q |
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| T |
30276905 |
catgcaggaatatccttcataaacatgaatgaacaatactagtccttctctttttataagcccctttgatacttttcacatatggagtattaagaaaagt |
30277004 |
T |
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| Q |
401 |
ttgtagtttaattaatgtgtatgtaatgtatgaatattactaaattgtcttttttgtgtatagatgtgtcaaattat |
477 |
Q |
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| T |
30277005 |
ttgtagtttaattaatgtgtatgtaatgtatgaatattactaaattgtcttttttgtgtatagatgtgtcaaattat |
30277081 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Complemental strand, 30511760 - 30511728
Alignment:
| Q |
388 |
tattaagaaaagtttgtagtttaattaatgtgt |
420 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
30511760 |
tattaagaaaagtttgtagtttatttaatgtgt |
30511728 |
T |
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