View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1179_low_2 (Length: 453)
Name: NF1179_low_2
Description: NF1179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1179_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 98 - 380
Target Start/End: Complemental strand, 1186143 - 1185876
Alignment:
| Q |
98 |
agtagtgaataggtgatagcccccttgctatgattatgaattatagttgacgtatgggttgatcacaaattccaacttcatatatagttgttgaaaattc |
197 |
Q |
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| T |
1186143 |
agtagtgaataggtgatagcccccttgctatgattatgaattatagttgacgtatgggttgatcacaaattccaacttcatatatagttgttgaaaattc |
1186044 |
T |
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| Q |
198 |
tttttcacactctaacgattgttttgtcgattttgcaacctataataatatatcctatagtttaaattataacaannnnnnnatttnnnnnnnctaacaa |
297 |
Q |
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| T |
1186043 |
tttttcacactctaacgattgttttgtcgattttgcaacc---------------tatagtttcaattataacaatttttttatttaaaaaaactaacaa |
1185959 |
T |
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| Q |
298 |
atcaacatatttttcttttgatttgcaggtaacataatttcctgcatggtgtacctggctcctctgtaagtaaattttaacag |
380 |
Q |
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| T |
1185958 |
atcaacatatttttcttttgatttgcaggtaacataatttcctgcatggtgtacttggctcctctgtaagtaaatttaaacag |
1185876 |
T |
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