View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1179_low_5 (Length: 401)
Name: NF1179_low_5
Description: NF1179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1179_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 29 - 388
Target Start/End: Complemental strand, 32227487 - 32227123
Alignment:
| Q |
29 |
aaaaacacactttcatctttctcagtaccaaaatggaggaacccaccttcctagtaaccatgttagtgcccttcatatgtagaaatgacctcaatagaag |
128 |
Q |
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| T |
32227487 |
aaaaacacactttcatctttcttagtaccaaaatggaggaacccaccttcctagtaaccatgttagtgcccttcatatgtagaaatgacctcaatagaag |
32227388 |
T |
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| Q |
129 |
tcatcaagtgacagattctcaacagagccaaatgtttcaactgatccaattcttgagtagtttgtcattgatccacccaaaaaatcaagtggtgaatcat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32227387 |
tcatcaagtgacagattctcaacagagccaaatgtttcaactgatccaattcttgagtagtttgtcattgatccacccaaaaaatcaagtggtgaatcat |
32227288 |
T |
|
| Q |
229 |
ttgagatggttgtgtcatatataaatgacatgcttgtatcattcattgcaggataagctacatcaaagcaacttttgttcatctca-----ctcgaccaa |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |
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| T |
32227287 |
ttgagatggttgtgtcatatataaatgacatgcttgtatcattcattgcaggataagctacatcaaagcaacttttgttcacctcataatcatcgacgaa |
32227188 |
T |
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| Q |
324 |
gatatgattgattgtatcattagcttcttccatatactcatcttgatcacaagctttctttgcct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32227187 |
gatatgattgattgtatcattagcttcttccatatactcatcttgatcacaagctttctttgcct |
32227123 |
T |
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