View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1179_low_9 (Length: 320)
Name: NF1179_low_9
Description: NF1179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1179_low_9 |
 | |
|
| [»] chr5 (6 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 98 - 320
Target Start/End: Complemental strand, 41687871 - 41687649
Alignment:
| Q |
98 |
aatgtttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatcttcctcaacttgaaaccttgttagtttttccattt |
197 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41687871 |
aatgcttcataattttgttgtgctcttttccctctttcacatagttcctctcttttcctcacatcttcctcaacttgaaaccttgttagtttttccattt |
41687772 |
T |
|
| Q |
198 |
caaacttctcttgaagatgtagaattttcgtttgcagtttcttatctctagtcactaaaacctcttcaacattatcaaagtcttctgttagaaacgatgt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41687771 |
caaacttctcttgaagatgtagaattttcgtttgcagtttcttatctctagtcactaaaacctcttcaacattatcaaagtcttctgttagaaacgatgt |
41687672 |
T |
|
| Q |
298 |
gcgtaacacagaaaccagttcat |
320 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41687671 |
gcgtaacacagaaaccagttcat |
41687649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 41686465 - 41686620
Alignment:
| Q |
102 |
tttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatcttcctcaacttgaaaccttgttagtttttccatttcaaa |
201 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||||| |||||| ||||||| |||| |||||||||| |||||||||| |||||| | |||| |||||| |
|
|
| T |
41686465 |
tttcataattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctcgttagtctctccaattcaaa |
41686564 |
T |
|
| Q |
202 |
cttctcttgaagatgtagaattttcgtttgcagtttcttatctctagtcactaaaa |
257 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | |||| ||| ||||| |
|
|
| T |
41686565 |
cttctcttgaagatgtagaatttcagcttgcagtttcttgtatctactcattaaaa |
41686620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 102 - 318
Target Start/End: Original strand, 41717915 - 41718131
Alignment:
| Q |
102 |
tttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatcttcctcaacttgaaaccttgttagtttttccatttcaaa |
201 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||| |||||| ||||||| |||| ||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
41717915 |
tttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaaccttgtttttttctccatttcaac |
41718014 |
T |
|
| Q |
202 |
cttctcttgaagatgtagaattttcgtttgcagtttcttatctctagtcactaaaacctcttcaacattatcaaagtcttctgttagaaacgatgtgcgt |
301 |
Q |
| |
|
|||||||||||||| || ||| | ||| ||| |||||| |||| ||||||||| | |||||| ||||||| |||||||| ||||| | ||| || |
|
|
| T |
41718015 |
cttctcttgaagatctataatctcattttctagtctcttatatctactcactaaaatcccttcaattctatcaaattcttctgtcagaaatgctgttcgc |
41718114 |
T |
|
| Q |
302 |
aacacagaaaccagttc |
318 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
41718115 |
aacaccgacaccagttc |
41718131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 291
Target Start/End: Original strand, 41708843 - 41709032
Alignment:
| Q |
102 |
tttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatcttcctcaacttgaaaccttgttagtttttccatttcaaa |
201 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||| |||||| ||||||| |||| ||||||||| |||||||||| ||| ||| |||||||||| |
|
|
| T |
41708843 |
tttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaacctcgtttttttctccatttcaac |
41708942 |
T |
|
| Q |
202 |
cttctcttgaagatgtagaattttcgtttgcagtttcttatctctagtcactaaaacctcttcaacattatcaaagtcttctgttagaaa |
291 |
Q |
| |
|
|||||||||||||| || ||| | ||| ||| |||||| |||| |||||||||||||||||| ||||||| | |||||| ||||| |
|
|
| T |
41708943 |
cttctcttgaagatctataatctcattttctagtctcttatatctactcactaaaacctcttcaattctatcaaactgttctgtcagaaa |
41709032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 266
Target Start/End: Original strand, 41659466 - 41659634
Alignment:
| Q |
98 |
aatgtttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatcttcctcaacttgaaaccttgttagtttttccattt |
197 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||| ||||||||| ||||||| |||| |||||| ||| |||||||||| | ||| | |||| | |
|
|
| T |
41659466 |
aatgtttcataattactctgtgccctttttcctctttcgcatagttcctctctttttctcaaatcttcttcagcttgaaacctcatcagtctctccaagt |
41659565 |
T |
|
| Q |
198 |
caaacttctcttgaagatgtagaattttcgtttgcagtttcttatctctagtcactaaaacctcttcaa |
266 |
Q |
| |
|
||||||||||||||| ||||||||| | || || ||| ||| || |||| |||||||||||| ||||| |
|
|
| T |
41659566 |
caaacttctcttgaaaatgtagaatctctgtgtgtagtctctcatatctactcactaaaaccttttcaa |
41659634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 286
Target Start/End: Complemental strand, 14690913 - 14690756
Alignment:
| Q |
129 |
ctctttcacatagttcccctcttttcctcacatcttcctcaacttgaaaccttgttagtttttccatttcaaacttctcttgaagatgtagaattttcgt |
228 |
Q |
| |
|
|||| ||||| |||||| | || ||| ||| |||||||||| |||| ||||| | | || | ||||| ||||||||||||| ||||| | |||| | || |
|
|
| T |
14690913 |
ctctctcacacagttcctcactcttcttcaaatcttcctcagcttgtaacctagcttgtctctccatatcaaacttctcttaaagattttgaatctctgt |
14690814 |
T |
|
| Q |
229 |
ttgcagtttcttatctctagtcactaaaacctcttcaacattatcaaagtcttctgtt |
286 |
Q |
| |
|
|| |||||||| ||||| | ||||||| ||||||||| ||||||| | ||||||| |
|
|
| T |
14690813 |
tttgagtttcttgtctctgctaactaaaatttcttcaacactatcaaattgttctgtt |
14690756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University