View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11800_low_11 (Length: 238)
Name: NF11800_low_11
Description: NF11800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11800_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 32039333 - 32039543
Alignment:
| Q |
8 |
ttacaagtactcactctatataactacacccattcccaaacgcacctttcagtctgatagttttaactctcaccaactctgttcagaaagaacagagaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32039333 |
ttacaagtactcactctatataactacacccattcccaaacgcacctttcagtctgatagttttaactctcaccaactctgttcagaaagaacagagaat |
32039432 |
T |
|
| Q |
108 |
caaagagataccgtacaccacaaaactcacacacacccttcaattcatttcatttccaccatttattcctatcatcaccaaaccgtgacacactctttcc |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32039433 |
caaagagataccgtacaaaacaaaactcacacacacccttcaa-----ttcatttccaccatttattcctctcatcaccaaaccgtgacacactctttcc |
32039527 |
T |
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| Q |
208 |
tttctcaccttccact |
223 |
Q |
| |
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|||||||||||||||| |
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| T |
32039528 |
tttctcaccttccact |
32039543 |
T |
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