View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11800_low_12 (Length: 201)
Name: NF11800_low_12
Description: NF11800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11800_low_12 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 53436086 - 53435898
Alignment:
| Q |
1 |
actccaacagctcaatttattacctaaaaattaagagaacaaaaactccaagaattcatctagttagtgaaaattaataacaaaaataattaacacaact |
100 |
Q |
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| T |
53436086 |
actccaacaactcaatttattacctaaaaattaagagaacaaaaactccaagaattcatctagttagtgaaaattaataacaaaaataattaacacaact |
53435987 |
T |
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| Q |
101 |
aaatatttttaaaatcctctttgatctcagtttgactccaaaacacactttgaattgatccaatttaacttaaaactacttaaaaatga |
189 |
Q |
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| T |
53435986 |
aaatatttttaaaatcctcttttatctcagtttgactccaaaatacactttgaattgattcaatttaacttaaaactacttaaaaatga |
53435898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 3216935 - 3217091
Alignment:
| Q |
34 |
agagaacaaaaactccaagaattcatctagttagtgaaaattaataacaaaaataattaacacaactaaatatttttaaaatcctctttgat----ctca |
129 |
Q |
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| T |
3216935 |
agagaacaaaaactccaaaaatttgtttggttagagagaactataaacaagaataactaacacaattggatattttcaaaatcctctttttttttgctca |
3217034 |
T |
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| Q |
130 |
gtttgactccaaaacacactttgaattgatccaatttaacttaaaactacttaaaaat |
187 |
Q |
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| T |
3217035 |
gtttgactttaaaag-cactctgaattgattcaacttaacttaaaactacttaaaaat |
3217091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 2867611 - 2867428
Alignment:
| Q |
1 |
actccaacagctcaatttattacctaaaaattaagagaacaaaaactccaagaattcatctagttagtgaaaattaataacaaaaataattaacacaact |
100 |
Q |
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| T |
2867611 |
actccaacagctcaatttattacctaaaaattaagagaacaaaaactccaagaattcatccagttagtgaaaattaataacaaaaataattaacacaact |
2867512 |
T |
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| Q |
101 |
aaatatttttaaaatcctctttgatctcagtttgactccaaaacacactttgaattgatccaatttaacttaaaactacttaaaa |
185 |
Q |
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| T |
2867511 |
aaatatttttaaaatcct-ttttatctcagtttgactccaaaacacactttgaattgattcaatttaacttaaaactacttaaaa |
2867428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 2879399 - 2879212
Alignment:
| Q |
1 |
actccaacagctcaatttattacctaaaaattaagagaacaaaaactccaagaattcatctagttagtgaaaattaataacaaaaataattaacacaact |
100 |
Q |
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| T |
2879399 |
actccaacaactcaatttattacctaaaaattaagagaacaaaaactccaaaaattcatctagttagtgaaaattaataacaaaaataattaacacaact |
2879300 |
T |
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| Q |
101 |
aaatatttttaaaatcctctttgatctcagtttgactccaaaacacactttgaattgatccaatttaacttaaaactacttaaaaatga |
189 |
Q |
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| T |
2879299 |
aaatatttttaaaatcct-ttttatctcagtttgactccaaaacacactttgaattgattcaatttaacttaaaactacttaaaaatga |
2879212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 35023041 - 35022931
Alignment:
| Q |
79 |
aacaaaaataattaacacaactaaatatttttaaaatcctctttgatctcagtttgactccaaaacacactttgaattgatccaatttaacttaaaacta |
178 |
Q |
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||||| ||||| ||||||| || ||||||||||||||||||| || ||| ||||||| ||| | ||| ||||||||| ||| |||||||||||||| |
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| T |
35023041 |
aacaagaataaccaacacaatcaagtatttttaaaatcctcttttatatcaatttgactttcaaaaagactctgaattgattcaacttaacttaaaacta |
35022942 |
T |
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| Q |
179 |
cttaaaaatga |
189 |
Q |
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| T |
35022941 |
cataaaaatga |
35022931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 559074 - 558918
Alignment:
| Q |
34 |
agagaacaaaaactccaagaattcatctagttagtgaaaattaataacaaaaataattaacacaactaaatatttttaaaatcctctttgat--ctcagt |
131 |
Q |
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| T |
559074 |
agagaacaaaaactccaacaatttgtttggttagagagaactataaacaagaataaccaacacaattggatattttcaaaatcctcttttcttgctcagt |
558975 |
T |
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| Q |
132 |
ttgactccaaaacacactttgaattgatccaatttaacttaaaactacttaaaaatga |
189 |
Q |
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| T |
558974 |
ttgactttaaaag-cactctgaattgattcaacttaacttaaaactacttaaaaatga |
558918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 22833597 - 22833634
Alignment:
| Q |
152 |
gaattgatccaatttaacttaaaactacttaaaaatga |
189 |
Q |
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| T |
22833597 |
gaattgattcaacttaacttaaaactacttaaaaatga |
22833634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 39485 - 39579
Alignment:
| Q |
91 |
taacacaactaaatatttttaaaatcctctttgat-ctcagtttgactccaaaacacactttgaattgatccaatttaacttaaaactacttaaaa |
185 |
Q |
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|||||||||| ||||||| |||||||||||| | | |||||||||| |||| ||||| ||||||||| ||| |||||| |||||||||||||| |
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| T |
39485 |
taacacaactggatattttcaaaatcctcttttttgcgcagtttgactataaaa-acactctgaattgattcaacttaactgaaaactacttaaaa |
39579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 5592465 - 5592428
Alignment:
| Q |
152 |
gaattgatccaatttaacttaaaactacttaaaaatga |
189 |
Q |
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| T |
5592465 |
gaattgattcaacttaacttaaaactacttaaaaatga |
5592428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23409217 - 23409161
Alignment:
| Q |
1 |
actccaacagctcaatttatt-acctaaaaattaagagaacaaaaactccaagaatt |
56 |
Q |
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| T |
23409217 |
actccaacagctcaatttattaatctaaaaattaacagaacacaaaatccaacaatt |
23409161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 23689160 - 23689248
Alignment:
| Q |
34 |
agagaacaaaaactccaagaattcatctagttagtgaaaattaataacaaaaataattaacacaactaaatatttttaaaatcctcttt |
122 |
Q |
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| T |
23689160 |
agagagcaaaaactccaagaatttgtttagttagagataattagcaacaagaataaccaatacaacttgatattttcaaaatcctcttt |
23689248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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