View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11800_low_2 (Length: 773)
Name: NF11800_low_2
Description: NF11800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11800_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 252 - 756
Target Start/End: Complemental strand, 35463557 - 35463056
Alignment:
| Q |
252 |
gttgcatttcaccaaaagcnnnnnnnnctctgaaatgaaacattaatttttaagagctataataaggtgttgtgttgggagatggtttagattggattat |
351 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35463557 |
gttgcatttcaccaaaagcaaaaaaaactctgaaatgaaacattaatttttaagagctataataaggtgttgtgctgggagatggtttagattggattat |
35463458 |
T |
|
| Q |
352 |
aacccgagctcccgaagcaagcctgttgaaataaaatcaaacttgtcaatcaatgactgagaacataaggtatttcaaccattgttctaaactgtggttc |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35463457 |
aacccgagctcccgaagcaagcctgttgaaataaaatcaaacttgtcaatcaatgactgagaacataaggtatttcaaccattgttctaaactgtggttc |
35463358 |
T |
|
| Q |
452 |
gcaaccgcagcttaaaaccatgatttaacagtgtatcaataatagaagtagggaaaaaggacgaagttaacacttaactttcttcgatttggaccacctt |
551 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35463357 |
gaaaccgcagcttaaaaccatgatttaacaatgtatcaataatagaagtagggaaaaaggacgaagttaacacttaactttcttcgatttggaccacctt |
35463258 |
T |
|
| Q |
552 |
ctcttctctaaatgagtctagcctcgtagattgtttttgccttatgcctgagtcattagttctatctcgagagcttcttgatccatcagaaataggagat |
651 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35463257 |
ctcgtctctaaatgagtctagcctcgtagattgtttttgccttatgcctgagtcattagttctatctcgagagcttcttgatccatcagaaataggagat |
35463158 |
T |
|
| Q |
652 |
ctactgaattcacttggtggcgatttggtcgttgaagaagtcataaccgaccgtgaattgcattttgagtttcccgaggatgatgattccaccatgtttt |
751 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35463157 |
ctactgaattcacttggtggcgatttggtcgttgaagaagtcataaccgaccgtgaattgcattttgagtttcccgagga---tgattccaccatgtttt |
35463061 |
T |
|
| Q |
752 |
gtgat |
756 |
Q |
| |
|
||||| |
|
|
| T |
35463060 |
gtgat |
35463056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 35463791 - 35463602
Alignment:
| Q |
18 |
acaaaaagattgtgtgcaatcacttcatttcagttggcagtgcctataacaagcacacaagatttttacaaaaagagtagtggaccattaggaccacacc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35463791 |
acaaaaagattgtgtgcaatcacttgatttcagttggcagtgcctataacaagcacacaagatttttacaaaaagagtagtggaccattaggaccacacc |
35463692 |
T |
|
| Q |
118 |
tgcactttagtcccttttgcagtgactatgtctatgtcacaacatttttcacttggtagattatagaatatagaatatatcacgtgaacc |
207 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35463691 |
ttcactttagtcccttttgcagtgactatgtctatgtcacaacatttttcacttggtagattatagaatatagaatatatcacgtgaacc |
35463602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 20980872 - 20980916
Alignment:
| Q |
335 |
ggtttagattggattataacccgagctcccgaagcaagcctgttg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
20980872 |
ggtttagattggattataacccgagctcctgaagccagcctgttg |
20980916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University