View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11800_low_3 (Length: 483)
Name: NF11800_low_3
Description: NF11800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11800_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 21716134 - 21715668
Alignment:
| Q |
11 |
caaaggatgagagcaaacaccagttgctttcgaggagaatttccagcatggagaagatatcgtatcagacggaaaatggtaaagaagggagaggcattgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716134 |
caaaggatgagagcaaacaccagttgctttcgaggagaatttccagcatggagaagatatcgtatcagacggaaaatggtaaagaagggagaggcattgg |
21716035 |
T |
|
| Q |
111 |
gaaaattaagatgcaaaagtgatattcaaccattttctcattatgctcctcttccaggcattcaataccagtcgtccgagaattttacttacttccaatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716034 |
gaaaattaagatgcaaaagtgatattcaaccattttctcattatgctcctcttccaggcattcaataccagtcgtccgagaattttacttacttccaatc |
21715935 |
T |
|
| Q |
211 |
aacaaaagcggcttacaatcagctcttggagttactaaatgacgattgcatctatatgataggtgtgtatggaatgggtggatgtgggaaaacaacactt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21715934 |
aacaaaagcggcttacaatcagctcttggagttactaaatgatgattgcatctatatgataggtgtgtatggaatgggtggatgtgggaaaacaacactt |
21715835 |
T |
|
| Q |
311 |
gtaaccgaagtcggtaagaaggctcaggaatcaaatatgttcgataaggtaatatctatcacagtgtctcaaactcaaaatattagagacattcaaggaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21715834 |
gtaaccgaagtcggtaagaaggctcaggaatcaaatatgttcgataaggtaatatctatcacagtgtctcaaactcaaaatattagagacattcaaggaa |
21715735 |
T |
|
| Q |
411 |
aaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtg |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21715734 |
aaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtg |
21715668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 477
Target Start/End: Original strand, 21703378 - 21703847
Alignment:
| Q |
11 |
caaaggatgagagcaaacaccagttgctttcgaggagaatttccagcatggagaagatatcgtatcagacggaaaatggtaaagaagggagaggcattgg |
110 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| | |||| |||||| ||||||||||||||||| | || | ||||||||||||||| | ||||| ||| |
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|
| T |
21703378 |
caaaggatgagaacaaacaccaggtgctttcaaagagattttccaacatggagaagatatcgtttgagcaagcaaatggtaaagaaggcacaggcaatgg |
21703477 |
T |
|
| Q |
111 |
gaaaattaagatgcaaaagtgatattcaaccattttctcattatgctcctcttccaggcattcaataccagt---cgtccgagaattttacttacttcca |
207 |
Q |
| |
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|| ||||| | | ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| | ||||| |||||||| | |||||| |
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|
| T |
21703478 |
aaagattaaaaggaaaaagcaatattcaaccattttctcacttagctcctcttccaggcattcaataccagtactcctccgaaaattttacatgcttcca |
21703577 |
T |
|
| Q |
208 |
atcaacaaaagcggcttacaatcagctcttggagttactaaatgacgattgcatctatatgataggtgtgtatggaatgggtggatgtgggaaaacaaca |
307 |
Q |
| |
|
||| ||||| | ||| ||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
21703578 |
atctacaaaggtggcatacaatcagctgttggagttactacgtgacgattgcatccatatgataggagtgtatggaatgggtggatgtgggaaaacaact |
21703677 |
T |
|
| Q |
308 |
cttgtaaccgaagtcggtaagaaggctcaggaatcaaatatgttcgataaggtaatatctatcacagtgtctcaaactcaaaatattagagacattcaag |
407 |
Q |
| |
|
|||| ||| ||||| |||||||||||| ||||||||||||||||||||||||| || | ||||||||||||||||||| ||| ||||| | ||||||| |
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|
| T |
21703678 |
cttgcaactgaagttggtaagaaggctgaggaatcaaatatgttcgataaggttatcttaatcacagtgtctcaaactccaaacgttagaaaaattcaag |
21703777 |
T |
|
| Q |
408 |
gaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtg |
477 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| ||||| | |||||||||||| ||||| |
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|
| T |
21703778 |
gaaaaatggcagctttgttaaacttgaaactcagtgaagaagatgaagacgaaagagcacaacgtttgtg |
21703847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 327 - 477
Target Start/End: Original strand, 21643971 - 21644121
Alignment:
| Q |
327 |
agaaggctcaggaatcaaatatgttcgataaggtaatatctatcacagtgtctcaaactcaaaatattagagacattcaaggaaaaatggcagacatgtt |
426 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
21643971 |
agaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagacattcatggaaaaatggcagacatgtt |
21644070 |
T |
|
| Q |
427 |
aaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtg |
477 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
21644071 |
aaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttgtg |
21644121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 327 - 474
Target Start/End: Original strand, 21622257 - 21622404
Alignment:
| Q |
327 |
agaaggctcaggaatcaaatatgttcgataaggtaatatctatcacagtgtctcaaactcaaaatattagagacattcaaggaaaaatggcagacatgtt |
426 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
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|
| T |
21622257 |
agaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagatattcatggaaaaatggtagacatgtt |
21622356 |
T |
|
| Q |
427 |
aaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggtt |
474 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
21622357 |
aaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggtt |
21622404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 207 - 471
Target Start/End: Original strand, 21115025 - 21115289
Alignment:
| Q |
207 |
aatcaacaaaagcggcttacaatcagctcttggagttactaaatgacgattgcatctatatgataggtgtgtatggaatgggtggatgtgggaaaacaac |
306 |
Q |
| |
|
|||||||||| | |||||||||||| || |||||| ||| || || |||||||||| ||| ||||| ||||||||||||||||||| || |||||||| |
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|
| T |
21115025 |
aatcaacaaaggtggcttacaatcaactattggaggcacttaaggatgattgcatctctataataggaatgtatggaatgggtggatgcggaaaaacaac |
21115124 |
T |
|
| Q |
307 |
acttgtaaccgaagtcggtaagaaggctcaggaatcaaatatgttcgataaggtaatatctatcacagtgtctcaaactcaaaatattagagacattcaa |
406 |
Q |
| |
|
|||| | | ||||| || ||||||||| |||||| | ||||||| |||||||| ||||| ||||| || ||||||||| ||||||||||| |||||| |
|
|
| T |
21115125 |
ccttgcagcagaagttggcaagaaggctgaggaattagatatgtttgataaggttatatcaatcactgtcgctcaaactccaaatattagaggcattcag |
21115224 |
T |
|
| Q |
407 |
ggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacg |
471 |
Q |
| |
|
|||||| | ||||| ||||||||||||||| | |||||||||| |||||||||||||||||||| |
|
|
| T |
21115225 |
ggaaaacttgcagatatgttaaacttgaaattggaggaagaaagtgaagagggaagagcacaacg |
21115289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 276 - 471
Target Start/End: Original strand, 21122521 - 21122716
Alignment:
| Q |
276 |
tgtatggaatgggtggatgtgggaaaacaacacttgtaaccgaagtcggtaagaaggctcaggaatcaaatatgttcgataaggtaatatctatcacagt |
375 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||| ||||| || ||||||||| |||||| ||||||| |||||||| ||||| ||||| || |
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|
| T |
21122521 |
tgtacggaatgggtggatgtggaaaaacaacccttgtaacggaagttggcaagaaggctgaggaattggatatgtttgataaggttatatcaatcaccgt |
21122620 |
T |
|
| Q |
376 |
gtctcaaactcaaaatattagagacattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacg |
471 |
Q |
| |
|
| | ||||| ||| ||||| |||||||||| |||| ||||| ||||||||||||||| | ||||||||| ||||| |||||||||||||| |
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|
| T |
21122621 |
gacaagaactccaaacattaggagcattcaaggacaaattgcagatatgttaaacttgaaattgggggaagaaagtgaagatggaagagcacaacg |
21122716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 297
Target Start/End: Original strand, 21622219 - 21622254
Alignment:
| Q |
262 |
ctatatgataggtgtgtatggaatgggtggatgtgg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
21622219 |
ctatatgataggtgtgtatggaatgggtggatgtgg |
21622254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 297
Target Start/End: Original strand, 21643933 - 21643968
Alignment:
| Q |
262 |
ctatatgataggtgtgtatggaatgggtggatgtgg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
21643933 |
ctatatgataggtgtgtatggaatgggtggatgtgg |
21643968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 259 - 477
Target Start/End: Complemental strand, 23010788 - 23010570
Alignment:
| Q |
259 |
catctatatgataggtgtgtatggaatgggtggatgtgggaaaacaacacttgtaaccgaagtcggtaagaaggctcaggaatcaaatatgttcgataag |
358 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||| |||||||||| | ||||| || ||||| |||||||||| | | | ||||||| | || || ||| |
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|
| T |
23010788 |
catctacatgataggagtgtatggaatgggcggaactgggaaaacagctcttgttactgaagttggtaagaaggttgaagcatcaaatgtttttgacaag |
23010689 |
T |
|
| Q |
359 |
gtaatatctatcacagtgtctcaaactcaaaatattagagacattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagg |
458 |
Q |
| |
|
|||| || |||||||||||||||| ||||||||||| |||||||||||||| || || | || ||| ||||| | |||||||||| || |||| |
|
|
| T |
23010688 |
actatattaattacagtgtctcaaactcccaatattagagatattcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagg |
23010589 |
T |
|
| Q |
459 |
gaagagcacaacggttgtg |
477 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
23010588 |
gaagagcacaacgtttgtg |
23010570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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