View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11800_low_4 (Length: 473)
Name: NF11800_low_4
Description: NF11800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11800_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 33675524 - 33675052
Alignment:
| Q |
1 |
cggcaagctttgcaagttgcaacaacnnnnnnncagcccagaaagatcaaaggactaattccttttattcatgttacaagataaatgaatagaatcaaat |
100 |
Q |
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| T |
33675524 |
cggcaagctttgcaagttgcaacaacaaaaaaacagcccagaaagatcaaaggactaattccttttattcatgttacaagataaatgaatagaatcaaat |
33675425 |
T |
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| Q |
101 |
ttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttggacaattattttccatgaggcatataacccaaagactgtt |
200 |
Q |
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| T |
33675424 |
ttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttggacaattattttccatgaggcatataacccaaagactgtt |
33675325 |
T |
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| Q |
201 |
aatgtaaaaattcaagctattaatttttcctccaatgcggttttgaatattcagaacacatctaagacctaaaccaaacaggctctgcagcaacagtgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675324 |
aatgtaaaaattcaagctattaatttttcctccaatgcggttttgaatatccagaacacatctaagacctaaaccaaacaggctctgcagcaacagtgca |
33675225 |
T |
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| Q |
301 |
agataaacaattttcacaattgtattgggccgattttacttactggcaatgaagcaggaatatgaatagaactatgagaagctttactgcgtgataagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675224 |
agataaacaattttcacaattgtattgggccgattttacttactggcaatgaagcaggaatatgaatagaactatgagaagctttactgcgtgataagtt |
33675125 |
T |
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| Q |
401 |
attctgaggataaaatgcagccgaggatggagctttcaatcttataactgaatttccaattgaagcagaagga |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675124 |
attctgaggataaaatgcagccgaggatggagctttcaatcttataactgaatttccaattgaagcagaagga |
33675052 |
T |
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