View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11800_low_5 (Length: 459)
Name: NF11800_low_5
Description: NF11800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11800_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 22 - 446
Target Start/End: Original strand, 21715267 - 21715691
Alignment:
| Q |
22 |
catcaaatgctgatgaattcctcatcttatgtagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagagg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
21715267 |
catcaaatgctgatgaattcctcatcttatgtagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggg |
21715366 |
T |
|
| Q |
122 |
cagtcccttacatttatcgcagagttctcgtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21715367 |
cagtcccttacatttatcgcagagttctcgtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggat |
21715466 |
T |
|
| Q |
222 |
tcatctttagataagagcgccaggtgaatattcttttgacagtccattaaagtgcatacttgctgattacgagtggttacaaggattttccatgcgccct |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21715467 |
tcatctttagataagagcgccaggtgaatattcttttgacagtccattaaagtgcatacttgctgattacgagtggttacaaggattttccatgcgccct |
21715566 |
T |
|
| Q |
322 |
tgttaacattgtctatgtgaatccctatattcatcaaattaaactctttccataaatcatcaactataacaagaattcgtttattttctttcaaactcaa |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
21715567 |
tgttaacattgtctatgtgaatccctatattcatcaaattaaactctttccataaatcatcaattataacaagaattcgtttattttctttcaaactcaa |
21715666 |
T |
|
| Q |
422 |
ccacaaccgttgtgctcttccctct |
446 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
21715667 |
ccacaaccgttgtgctcttccctct |
21715691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 21622748 - 21622456
Alignment:
| Q |
22 |
catcaaatgctgatgaattcctcatcttatgtagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagagg |
121 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
21622748 |
catcaaatgccgatgaattcctcatcttatgtagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggc |
21622649 |
T |
|
| Q |
122 |
cagtcccttacatttatcgcagagttctcgtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21622648 |
cagtcccttacatttatcgcagagttctcgtggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggat |
21622549 |
T |
|
| Q |
222 |
tcatctttagataagagcgccaggtgaatattcttttgacagtccattaaagtgcatacttgctgattacgagtggttacaaggattttccat |
314 |
Q |
| |
|
|||||||||||||| ||| | || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
21622548 |
tcatctttagataaaagctctagatgaatattcttttgacagtccattgaagtgcatacttgctgattacgagtggttacaaggatattccat |
21622456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 21644462 - 21644170
Alignment:
| Q |
22 |
catcaaatgctgatgaattcctcatcttatgtagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagagg |
121 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
21644462 |
catcaaatgccgatgaattcctcatcttatgtagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggc |
21644363 |
T |
|
| Q |
122 |
cagtcccttacatttatcgcagagttctcgtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21644362 |
cagtcccttacatttatcgcagagttctcgtggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggat |
21644263 |
T |
|
| Q |
222 |
tcatctttagataagagcgccaggtgaatattcttttgacagtccattaaagtgcatacttgctgattacgagtggttacaaggattttccat |
314 |
Q |
| |
|
|||||||||||||| ||| | || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21644262 |
tcatctttagataaaagctctagatgaatattcttttgacagtccattgaagtgcatacttgctgattacgagtggttacaaggatattccat |
21644170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 35 - 440
Target Start/End: Complemental strand, 21704236 - 21703830
Alignment:
| Q |
35 |
tgaattcctcatcttatgtagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagaggcagtcccttacat |
134 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||| || || ||||||||| ||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
21704236 |
tgaattcctcaacttatatagtgcaacatcccactcacttttgtgtttcccttttaaggaagacgccacagttacaattgctagaggcagtcctttacat |
21704137 |
T |
|
| Q |
135 |
ttatcgcagagttctcgtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagata |
234 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||| ||| || || || | |||||||| | |||||||||||||||||||||||| ||||| | || ||||| |
|
|
| T |
21704136 |
ttattgcagagttcatgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacaaagtccaagattcgttttcagata |
21704037 |
T |
|
| Q |
235 |
agagcgccaggtgaatattcttttgacagtccattaaagtgcatacttgctgattacgagtggttacaaggattttccatgcgcccttgttaacattgtc |
334 |
Q |
| |
|
||||| |||| | |||| | |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| | || |
|
|
| T |
21704036 |
agagccccagattaataattttttgacagttcattgaagtgcatacttgccgattacgagtggttacaaggattttccatgctcccttattaacactatc |
21703937 |
T |
|
| Q |
335 |
tatgtgaatccctatattcatcaaattaaactctttccataaatcatcaactataacaagaattcg-tttattttctttcaaactcaaccacaaccgttg |
433 |
Q |
| |
|
|||| ||||||||||| || ||| |||||||| |||||| ||||| || ||||| ||||||||||| ||| |||||||||| |||||||||||| ||||| |
|
|
| T |
21703936 |
tatgcgaatccctatactcgtcagattaaactttttccacaaatcgtctactatgacaagaattcgtttttttttctttcagactcaaccacaaacgttg |
21703837 |
T |
|
| Q |
434 |
tgctctt |
440 |
Q |
| |
|
||||||| |
|
|
| T |
21703836 |
tgctctt |
21703830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 123 - 446
Target Start/End: Complemental strand, 21115595 - 21115272
Alignment:
| Q |
123 |
agtcccttacatttatcgcagagttctcgtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggatt |
222 |
Q |
| |
|
||||| ||||| | || ||||| ||| |||||||||||||||| | ||||||| | | |||| ||| ||||| ||||||||| || ||||| |||| |
|
|
| T |
21115595 |
agtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagatt |
21115496 |
T |
|
| Q |
223 |
catctttagataagagcgccaggtgaatattcttttgacagtccattaaagtgcatacttgctgattacgagtggttacaaggattttccatgcgccctt |
322 |
Q |
| |
|
|||||| ||| |||||| ||| ||||| |||||||||||||||||| | || || || |||| |||||||||||||| |||| ||||||| | || |
|
|
| T |
21115495 |
catcttcagacaagagccccaaatgaatcttcttttgacagtccattgatgtacagacatgctcattacgagtggttatcaggaccttccatgtgtgctc |
21115396 |
T |
|
| Q |
323 |
gttaacattgtctatgtgaatccctatattcatcaaattaaactctttccataaatcatcaactataacaagaattcgtttattttctttcaaactcaac |
422 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||| ||||||| |||||| ||| || ||||| | ||||||||| || |||| ||| |||| |||| |
|
|
| T |
21115395 |
gttaacattgtctacgagaatccctatatttatcaaatgaaactctctccatagatcgtccactattataagaattcgcttcttttgttttaaacacaac |
21115296 |
T |
|
| Q |
423 |
cacaaccgttgtgctcttccctct |
446 |
Q |
| |
|
|| || |||||||||||||||||| |
|
|
| T |
21115295 |
cataaacgttgtgctcttccctct |
21115272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 21644175 - 21644098
Alignment:
| Q |
369 |
ttccataaatcatcaactataacaagaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttccctct |
446 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21644175 |
ttccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctcttccctct |
21644098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 21622461 - 21622384
Alignment:
| Q |
369 |
ttccataaatcatcaactataacaagaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttccctct |
446 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21622461 |
ttccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccataaccgttgtgctcttccctct |
21622384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 442
Target Start/End: Complemental strand, 21123080 - 21122703
Alignment:
| Q |
65 |
ccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagaggcagtcccttacatttatcgcagagttctcgtggcacaccatcc |
164 |
Q |
| |
|
||||||| | |||| ||||||||||||| |||| | ||||||| || |||| || |||||||| |||| || ||||| |||| |||| |||||||| |
|
|
| T |
21123080 |
ccactcattattatcctttccttttaaggaagaagacatagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatct |
21122981 |
T |
|
| Q |
165 |
attgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataagagcgccaggtgaatattcttttgacagt |
264 |
Q |
| |
|
| |||| || || | |||| ||| |||| |||||||||| || ||||||||||||||||| || |||||| ||| ||||| |||| ||||| | |
|
|
| T |
21122980 |
aatgacacagagaattcgtcatcaattactgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcatcttgtgacaat |
21122881 |
T |
|
| Q |
265 |
ccattaaagtgcatacttgctgattacgagtggttacaaggattttccatgcgcccttgttaacattgtctatgtgaatccctatattcatcaaattaaa |
364 |
Q |
| |
|
||||||| | || || | || | |||| |||||||||||||||||| |||| || | ||| |||||| || | |||||||| ||| | |||||| ||| |
|
|
| T |
21122880 |
tcattaaaatacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtataagcgaatccctgtatccttcaaatgaaa |
21122781 |
T |
|
| Q |
365 |
ctctttccataaatcatcaactataacaagaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttcc |
442 |
Q |
| |
|
|||| |||||| || |||||||| | |||| ||| || ||||||| |||| |||||| | |||||||||||||| |
|
|
| T |
21122780 |
ctctctccatagattgtcaactattataagagttctcttcatttcttttaaacgcaaccatagacgttgtgctcttcc |
21122703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 151 - 445
Target Start/End: Original strand, 23010298 - 23010592
Alignment:
| Q |
151 |
gtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataagagcgccaggtgaat |
250 |
Q |
| |
|
||||||||||||| | |||||||| || || ||| ||| | |||||| ||| ||||||||| ||| || ||||||| | |||||| | || ||||| |
|
|
| T |
23010298 |
gtggcacaccatctaatgacttggggaaattttcatcaatatgtgcatgttttcggaacaaagaccaagactcatcttcatctaagagtcctagatgaat |
23010397 |
T |
|
| Q |
251 |
attcttttgacagtccattaaagtgcatacttgctgattacgagtggttacaaggattttccatgcgcccttgttaacattgtctatgtgaatccctata |
350 |
Q |
| |
|
||||||||||||| ||| | | ||||| || ||||||||||||||| ||||||| |||||||| ||||||||| ||||||||| | ||||||||| | |
|
|
| T |
23010398 |
cttcttttgacagtgcatcagatcacatacatgttgattacgagtggttgcaaggatcttccatgcacccttgttatcattgtctaagcgaatccctaca |
23010497 |
T |
|
| Q |
351 |
ttcatcaaattaaactctttccataaatcatcaactataacaagaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttccctc |
445 |
Q |
| |
|
| |||||| ||||||| ||||||||||||| ||||| || ||||| || || ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23010498 |
tcgttcaaatcaaactctctccataaatcatctactattacgagaatccgcttcttttctttcaaactcaaccacaaacgttgtgctcttccctc |
23010592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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