View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11800_low_6 (Length: 393)
Name: NF11800_low_6
Description: NF11800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11800_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 66 - 375
Target Start/End: Original strand, 3456084 - 3456393
Alignment:
| Q |
66 |
aatagtcctttcgtctctcactgcagagtagctacttagggtttcaacttacaactcatctttaaatactacggtccagtttacgacactgagtcggcct |
165 |
Q |
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| T |
3456084 |
aatagtcctttcgtctctgactgcagagtagctacttaggttttcaaattacaactcatgtttaaatactatggtccactttacaacactgagtcggcct |
3456183 |
T |
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| Q |
166 |
tttagattgaaaaattcataacatttgcaaaaacacatttcgcatccaaaatgatgaatcaactaaaacttcaatagaaaatatataatttaactattac |
265 |
Q |
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| T |
3456184 |
ttaaaattgaaaaattcattacatttgcaaaaacaaatttagcatccaaaatgatgaatcaactaaaacttaaatagaagatatataatttaaccattac |
3456283 |
T |
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| Q |
266 |
acatgacatggaagtattgaattatatgtcatgctatacaccaagattttttgcaagtaatgtcaggtaaagaagaaataaacacaatactcactgtaat |
365 |
Q |
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|||| |||||||||| |||||||||||| || || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3456284 |
acataacatggaagttttgaattatatgacaagccatacaccaagtttttttgcaagtaatatcaggtaaagaagaaataaacacaatactcactgtaat |
3456383 |
T |
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| Q |
366 |
atacctgatg |
375 |
Q |
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|||||||||| |
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| T |
3456384 |
atacctgatg |
3456393 |
T |
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