View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11800_low_7 (Length: 358)
Name: NF11800_low_7
Description: NF11800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11800_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 40804397 - 40804053
Alignment:
| Q |
1 |
gggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcacttatctttcctcttaaaaactt |
100 |
Q |
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| T |
40804397 |
gggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcgcttatctttcctcttaaaaactt |
40804298 |
T |
|
| Q |
101 |
gagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatattaccaattatgtttctcttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804297 |
gagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatattaccaattatgtttctcttttg |
40804198 |
T |
|
| Q |
201 |
ttttaatcccttgatgatgttcaccttgatagtaagattattagataaatggtatt-ttttaaatattgatataacctc---nnnnnnnnnnnnnnacat |
296 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
40804197 |
ttttagtcccttgatgatgttcaccttgatagtaagattattagataaatggtatttttttaaatattgatataacctctttttttttttttttttacat |
40804098 |
T |
|
| Q |
297 |
gatcgtgttaaagttgaaaaacaccatgagatatgtaggttttgt |
341 |
Q |
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| T |
40804097 |
gatcgtgttaaaattgaaaaacaccatgagatatgtaggttttgt |
40804053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 5115901 - 5115847
Alignment:
| Q |
7 |
tcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaat |
61 |
Q |
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|||||||||||||| |||||||| ||||||| ||||| |||||||||||||||| |
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| T |
5115901 |
tcattgtcaagaaaatgatatgtcttgttcctgttattgggcttgaaacaccaat |
5115847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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