View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11801_high_5 (Length: 438)

Name: NF11801_high_5
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11801_high_5
NF11801_high_5
[»] chr7 (8 HSPs)
chr7 (19-220)||(32910299-32910500)
chr7 (281-427)||(32910578-32910724)
chr7 (24-220)||(32932156-32932352)
chr7 (75-220)||(32921744-32921889)
chr7 (21-220)||(32940381-32940580)
chr7 (118-219)||(32897449-32897550)
chr7 (315-396)||(32910612-32910693)
chr7 (321-396)||(35880145-35880219)
[»] chr4 (2 HSPs)
chr4 (75-220)||(11822264-11822409)
chr4 (317-373)||(45121171-45121227)
[»] chr2 (5 HSPs)
chr2 (315-373)||(4931585-4931643)
chr2 (338-396)||(4931585-4931643)
chr2 (318-380)||(37300003-37300065)
chr2 (330-380)||(4980336-4980386)
chr2 (330-406)||(37300002-37300078)
[»] chr8 (1 HSPs)
chr8 (315-395)||(26901484-26901564)
[»] scaffold0024 (3 HSPs)
scaffold0024 (332-380)||(132627-132675)
scaffold0024 (319-374)||(142177-142232)
scaffold0024 (337-377)||(142177-142217)
[»] chr6 (2 HSPs)
chr6 (313-396)||(2511405-2511488)
chr6 (315-396)||(2511407-2511488)
[»] chr5 (3 HSPs)
chr5 (330-408)||(6965315-6965394)
chr5 (315-378)||(29919368-29919431)
chr5 (317-395)||(8610329-8610407)
[»] chr1 (2 HSPs)
chr1 (331-380)||(46170410-46170459)
chr1 (360-396)||(47567821-47567857)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 32910299 - 32910500
Alignment:
Q  19 tgttctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagattttccaacaacaagaaacaatttcc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32910299 tgttctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagattttccaaaaacaagaaacaatttcc 32910398  T
Q  119 tcttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32910399 tcttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttaccattttgatcagaacttagatcttcttcatattggcaaagatgttg 32910498  T
Q  219 ag 220  Q
    ||    
T  32910499 ag 32910500  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 281 - 427
Target Start/End: Original strand, 32910578 - 32910724
Alignment:
Q  281 gttcttcttgattactatgaagttactccctgcaatcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 380  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  32910578 gttcttcttgattactatgaagttactccctacgatcttaaatataataaaaaagtcaaatgtatttggtccaaatttaaatcaaatatatttgactttt 32910677  T
Q  381 cgattatatttaagatggagggagtatatatatgtaaatgtattcat 427  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  32910678 tgattatatttaagatggagggagtatatatatgtaaatgtattcat 32910724  T

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Target: chr7; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 32932156 - 32932352
Alignment:
Q  24 tactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagattttccaacaacaagaaacaatttcctctta 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |  | |||||    
T  32932156 tactcttgttaatgcctgcaatcacttcctcccaatatttaggaaacaacctactcactaatcgaaagattttccaaaaacaagaaaccttaacatctta 32932255  T
Q  124 tgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttgag 220  Q
     |||||| | ||||||||||||||||||||||  ||| | |||||||| |||||||| |||||||||||||||||||| |||||||| ||| |||||    
T  32932256 cgctgtcatatttgatgctggtagcactggtactcgtgtccatgtttaccattttgaccagaacttagatcttcttcacattggcaatgatattgag 32932352  T

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Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 32921744 - 32921889
Alignment:
Q  75 tactcactaatcgaaagattttccaacaacaagaaacaatttcctcttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttatca 174  Q
    |||||||||| || |||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||||||| ||    
T  32921744 tactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttacca 32921843  T
Q  175 ttttgatcagaacttagatcttcttcatattggcaaagatgttgag 220  Q
    ||||||||| |||||| ||||||||||| |||| ||||||||||||    
T  32921844 ttttgatcaaaacttaaatcttcttcatgttggtaaagatgttgag 32921889  T

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Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 32940381 - 32940580
Alignment:
Q  21 ttctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagat-tttccaacaacaagaaacaatttcct 119  Q
    |||||||||| || |||||| ||||| ||||||| |||||| | ||||||||  ||||||| ||||| || || ||||||| ||||||||||  |  |||    
T  32940381 ttctactcttcttgatgcctacaatctcttcctcccaatatcttggaaacaatatactcaccaatcgtaaaatatttccaa-aacaagaaactctaacct 32940479  T
Q  120 cttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttga 219  Q
    | || |||||||| ||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  32940480 cgtacgctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttga 32940579  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 32897449 - 32897550
Alignment:
Q  118 ctcttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgtt 217  Q
    ||||||||||||  | ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||| |||| |||||||||||| ||    
T  32897449 ctcttatgctgttatttttgatgctggtagctctggtagccgtgttcatgtttttcattttgatcagaatttagatcttgttcacattggcaaagatctt 32897548  T
Q  218 ga 219  Q
    ||    
T  32897549 ga 32897550  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 396
Target Start/End: Complemental strand, 32910693 - 32910612
Alignment:
Q  315 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 396  Q
    |||||||||||||| |||||||||||| ||| || || ||||||  | ||||||||||||||||||  ||||||||||||||    
T  32910693 atcttaaatataatcaaaaagtcaaatatatttgatttaaatttggaccaaatacatttgacttttttattatatttaagat 32910612  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 35880219 - 35880145
Alignment:
Q  321 aatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 396  Q
    ||||||| |||||| |||||| ||| |||| |||||||||||||||   ||||||||||| | |||||||||||||    
T  35880219 aatataagaaaaaa-tcaaatatatttggtccaaatttaaatcaaacgtatttgactttttgtttatatttaagat 35880145  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 11822264 - 11822409
Alignment:
Q  75 tactcactaatcgaaagattttccaacaacaagaaacaatttcctcttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttatca 174  Q
    |||||||||| || |||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| | |||||||| ||    
T  11822264 tactcactaaccgtaagattttcccaaaacaagaaacaatttcctcttacgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttacca 11822363  T
Q  175 ttttgatcagaacttagatcttcttcatattggcaaagatgttgag 220  Q
    ||||||||| |||||| ||||||||||| |||| ||||||||||||    
T  11822364 ttttgatcaaaacttaaatcttcttcatgttggtaaagatgttgag 11822409  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 45121227 - 45121171
Alignment:
Q  317 cttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacattt 373  Q
    |||||||||||  |||||||||||||||| | || ||||||||||||||||||||||    
T  45121227 cttaaatataaacaaaaagtcaaatgtatttagtccaaatttaaatcaaatacattt 45121171  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 4931643 - 4931585
Alignment:
Q  315 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacattt 373  Q
    |||||||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  4931643 atcttaaatataaacaaaaagtcaaatgtatttgattcaaatttaaatcaaatacattt 4931585  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 4931585 - 4931643
Alignment:
Q  338 aaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 396  Q
    |||||||| || || |||||| ||||||||||||||||||||| | |||||||||||||    
T  4931585 aaatgtatttgatttaaatttgaatcaaatacatttgactttttgtttatatttaagat 4931643  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 37300065 - 37300003
Alignment:
Q  318 ttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 380  Q
    ||||||||||  |||||||||||||||| |||||||||||| ||  ||||||||| |||||||    
T  37300065 ttaaatataaataaaaagtcaaatgtatttggttcaaatttcaactaaatacattcgactttt 37300003  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 4980336 - 4980386
Alignment:
Q  330 aaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 380  Q
    |||||||||||||||||| | ||||||||| |||||||||| |||| ||||    
T  4980336 aaaaagtcaaatgtatatagctcaaatttagatcaaatacaattgattttt 4980386  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 37300002 - 37300078
Alignment:
Q  330 aaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagatggagggagta 406  Q
    |||||||| ||||||| | ||| |||||| || ||||||||||||||||||   |||||||||| | ||| ||||||    
T  37300002 aaaaagtcgaatgtatttagttgaaatttgaaccaaatacatttgactttttatttatatttaaaacggaaggagta 37300078  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 395
Target Start/End: Complemental strand, 26901564 - 26901484
Alignment:
Q  315 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaaga 395  Q
    ||||||||||||   | ||||| |||||||| | |||||||||||||||||||||||||||||||| |  |||||||||||    
T  26901564 atcttaaatatatgcacaaagttaaatgtattttgttcaaatttaaatcaaatacatttgactttttgtatatatttaaga 26901484  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 132627 - 132675
Alignment:
Q  332 aaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 380  Q
    |||||||||||||| |||| ||| |||||| ||||||||||||||||||    
T  132627 aaagtcaaatgtatttggtccaactttaaaccaaatacatttgactttt 132675  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 142232 - 142177
Alignment:
Q  319 taaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttg 374  Q
    |||||| || |||| |||||||||||| ||||| |||||| |||||||||||||||    
T  142232 taaataaaaaaaaagagtcaaatgtatttggtttaaatttgaatcaaatacatttg 142177  T

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Target: scaffold0024; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 142177 - 142217
Alignment:
Q  337 caaatgtatatggttcaaatttaaatcaaatacatttgact 377  Q
    ||||||||| || |||||||||||| |||||||||||||||    
T  142177 caaatgtatttgattcaaatttaaaccaaatacatttgact 142217  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 396
Target Start/End: Original strand, 2511405 - 2511488
Alignment:
Q  313 caatcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 396  Q
    ||||||||||||||   |||| ||||||||| | |  || ||||||| |||||||||||||||||||| | ||| |||||||||    
T  2511405 caatcttaaatatatacaaaaggtcaaatgttttttatttaaatttagatcaaatacatttgactttttgtttagatttaagat 2511488  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 396
Target Start/End: Complemental strand, 2511488 - 2511407
Alignment:
Q  315 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaagat 396  Q
    ||||||||| |||  |||||||||||||||| || |  |||||||||| ||| ||||||||| ||| |  ||||||||||||    
T  2511488 atcttaaatctaaacaaaaagtcaaatgtatttgatctaaatttaaataaaaaacatttgaccttttgtatatatttaagat 2511407  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 6965394 - 6965315
Alignment:
Q  330 aaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaaga-tggagggagtata 408  Q
    ||||| |||||||||| |||| ||||||| ||| ||||||||||||||||| | ||| || ||||| | |||||||||||    
T  6965394 aaaaaatcaaatgtatttggtccaaatttgaattaaatacatttgactttttgcttaaatataagactcgagggagtata 6965315  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 29919431 - 29919368
Alignment:
Q  315 atcttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactt 378  Q
    ||||||||| |||  ||||||| |||||||| ||||||| ||||| | ||||||||||||||||    
T  29919431 atcttaaatttaagtaaaaagtaaaatgtatttggttcatatttagaacaaatacatttgactt 29919368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 8610407 - 8610329
Alignment:
Q  317 cttaaatataataaaaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgacttttcgattatatttaaga 395  Q
    |||||||||||  |||||| ||||||||| ||||  ||||||| || |||| |||||||||||| |  |||||||||||    
T  8610407 cttaaatataagcaaaaagacaaatgtatttggtataaatttagattaaatccatttgactttttgtgtatatttaaga 8610329  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 46170459 - 46170410
Alignment:
Q  331 aaaagtcaaatgtatatggttcaaatttaaatcaaatacatttgactttt 380  Q
    |||||| |||||||| |||| |||||||| || |||||||||||||||||    
T  46170459 aaaagtaaaatgtatttggtccaaatttagattaaatacatttgactttt 46170410  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 47567821 - 47567857
Alignment:
Q  360 aatcaaatacatttgacttttcgattatatttaagat 396  Q
    ||||||||||||||||||||| | |||||||||||||    
T  47567821 aatcaaatacatttgactttttgcttatatttaagat 47567857  T

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