View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11801_high_9 (Length: 390)

Name: NF11801_high_9
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11801_high_9
NF11801_high_9
[»] chr4 (10 HSPs)
chr4 (4-373)||(9603392-9603761)
chr4 (5-248)||(9594590-9594833)
chr4 (51-248)||(9582840-9583037)
chr4 (51-248)||(9588535-9588732)
chr4 (65-172)||(9573428-9573536)
chr4 (65-172)||(9568282-9568389)
chr4 (62-158)||(54295949-54296045)
chr4 (86-159)||(37894927-37895000)
chr4 (252-325)||(9583054-9583128)
chr4 (252-325)||(9588749-9588823)
[»] chr6 (19 HSPs)
chr6 (56-162)||(32745744-32745850)
chr6 (51-177)||(32973513-32973639)
chr6 (56-159)||(29123217-29123320)
chr6 (60-157)||(29144359-29144456)
chr6 (56-156)||(34279400-34279500)
chr6 (62-157)||(29130392-29130487)
chr6 (56-147)||(29149753-29149844)
chr6 (56-178)||(29152965-29153087)
chr6 (60-156)||(34259145-34259241)
chr6 (60-157)||(21379332-21379429)
chr6 (89-174)||(34281021-34281106)
chr6 (62-149)||(29299150-29299237)
chr6 (61-157)||(23216862-23216958)
chr6 (60-117)||(29136409-29136466)
chr6 (60-160)||(21375240-21375340)
chr6 (51-156)||(25320185-25320290)
chr6 (51-156)||(26149878-26149983)
chr6 (70-120)||(2742756-2742806)
chr6 (51-156)||(13339136-13339241)
[»] scaffold0134 (1 HSPs)
scaffold0134 (61-154)||(17144-17237)
[»] chr7 (1 HSPs)
chr7 (51-135)||(42445421-42445505)
[»] chr2 (2 HSPs)
chr2 (87-153)||(7436173-7436239)
chr2 (68-153)||(7524980-7525065)
[»] chr8 (1 HSPs)
chr8 (19-146)||(31135828-31135955)
[»] chr5 (9 HSPs)
chr5 (56-147)||(40548366-40548457)
chr5 (51-156)||(42777087-42777192)
chr5 (64-156)||(42405805-42405897)
chr5 (66-147)||(31788623-31788704)
chr5 (66-147)||(37512003-37512084)
chr5 (66-147)||(40544233-40544314)
chr5 (87-159)||(32642005-32642077)
chr5 (86-152)||(39725456-39725522)
chr5 (53-153)||(42841468-42841568)
[»] scaffold0054 (2 HSPs)
scaffold0054 (51-144)||(34343-34436)
scaffold0054 (51-144)||(40700-40793)
[»] scaffold0129 (1 HSPs)
scaffold0129 (91-146)||(9564-9619)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 4 - 373
Target Start/End: Original strand, 9603392 - 9603761
Alignment:
Q  4 atgagaattaaacaagagattgttgcagaatgtgttcataaaactacggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaa 103  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  9603392 atgagaattaaataagagattgttgcagaatgtgttcataaaactacggttctcagataagagagaccatggtttacaaaagcattcaaatcgcttaaaa 9603491  T
Q  104 gatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggtggtgctaaccttttcattctttacagccaccgactccattgcag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  9603492 gatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggtggtgctacccttttcgttctttacagccaccgactccattgcag 9603591  T
Q  204 gttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgattagtagaaaccctgaacaatttttgagcgagttggtggatgaatggagaaacccta 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  9603592 gttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgattagtagaaaccctaaacaacttttgagcgagtttgtggatgaatggagaaacccta 9603691  T
Q  304 gcatcttttatatattgagaaacgggcccttcaaacccttcagttttccattttctttttgccacaaaag 373  Q
     ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  9603692 acatcttttatatattgagaaaggggcccttcaaacccttctgttttccattttctttttgccacaaaag 9603761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 5 - 248
Target Start/End: Original strand, 9594590 - 9594833
Alignment:
Q  5 tgagaattaaacaagagattgttgcagaatgtgttcataaaactacggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaag 104  Q
    ||||||||| | ||||||||||||| |||  ||||||| ||   |  ||| ||| ||||||||||||||| ||| | ||| |||||||||||||||||||    
T  9594590 tgagaattagataagagattgttgcggaacatgttcatgaagtgatcgttttcacataagagagaccatgctttgcgaacacattcaaatcgcttaaaag 9594689  T
Q  105 atttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggtggtgctaaccttttcattctttacagccaccgactccattgcagg 204  Q
    |||||| ||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||   || ||| | ||||| ||||||||    ||    
T  9594690 atttaataggtaatttagatagaatggagaaggaaatatcatcagctatataggtggtgctcacctttctcttttttgcggccactgactccatgagcgg 9594789  T
Q  205 ttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgatt 248  Q
    ||| |||| ||||||||||||||| |||||||||||||||||||    
T  9594790 ttgtaaattggaatgcaatgagatattgaaagcgcaaagtgatt 9594833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 51 - 248
Target Start/End: Original strand, 9582840 - 9583037
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 150  Q
    |||| ||||||||||||||||||| ||| | || ||||||||| || ||||  ||||||| |||||||||||||| ||| ||||||||||| ||||||||    
T  9582840 ggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggataaaatagagaaggcaatttcatcagg 9582939  T
Q  151 tatataggtggtgctaaccttttcattcttta-cagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgatt 248  Q
    ||||||||||||||| ||| |||| || |||| |||| || |||||||| |  |||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  9582940 tatataggtggtgctcacc-tttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaaagtgatt 9583037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 51 - 248
Target Start/End: Original strand, 9588535 - 9588732
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 150  Q
    |||| ||||||||||||||||||| ||| | || ||||||||| || ||||  ||||||| |||||||||||||| ||| ||||||||||| ||||||||    
T  9588535 ggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggataaaatagagaaggcaatttcatcagg 9588634  T
Q  151 tatataggtggtgctaaccttttcattcttta-cagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgatt 248  Q
    ||||||||||||||| ||| |||| || |||| |||| || |||||||| |  |||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  9588635 tatataggtggtgctcacc-tttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaaagtgatt 9588732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 9573536 - 9573428
Alignment:
Q  65 agagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggc-aatatcatcaggtatataggtggtg 163  Q
    |||||||||| ||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9573536 agagaccatgatttgcgaacacattcaaatcgcttaaaagatttaataggcaatttggatagaatggagaaggcaaatatcatcaggtatataggtggtg 9573437  T
Q  164 ctaaccttt 172  Q
    || ||||||    
T  9573436 ctcaccttt 9573428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 9568389 - 9568282
Alignment:
Q  65 agagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggtggtgc 164  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |||| |||| ||||    
T  9568389 agagaccatgatttacgaacgcattcaaatcgcttaatagatttaaaaggcaatttggatagaatagagaaggcaatatcatcagatatacaggttgtgc 9568290  T
Q  165 taaccttt 172  Q
    | ||||||    
T  9568289 tcaccttt 9568282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 54295949 - 54296045
Alignment:
Q  62 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatagg 158  Q
    ||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||    
T  54295949 aagagagaccatgatctacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatatagg 54296045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 37895000 - 37894927
Alignment:
Q  86 cattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 159  Q
    |||||||||||||| |||||||| ||||| | ||||||||||||||||||||||| ||| |||||||| |||||    
T  37895000 cattcaaatcgcttcaaagatttgagagggagtttggatagaatggagaaggcaacatcttcaggtatttaggt 37894927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 9583054 - 9583128
Alignment:
Q  252 agaaaccctgaacaatttttgagcgagttggtggatgaatggagaaaccctagc-atcttttatatattgagaaa 325  Q
    ||||||||| ||||| ||| ||||||||  ||||||||||  ||||||||||||  | |||||||||||||||||    
T  9583054 agaaaccctaaacaaatttggagcgagtctgtggatgaatatagaaaccctagcgcttttttatatattgagaaa 9583128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 9588749 - 9588823
Alignment:
Q  252 agaaaccctgaacaatttttgagcgagttggtggatgaatggagaaaccctagc-atcttttatatattgagaaa 325  Q
    ||||||||| ||||| ||| ||||||||  ||||||||||  ||||||||||||  | |||||||||||||||||    
T  9588749 agaaaccctaaacaaatttggagcgagtctgtggatgaatatagaaaccctagcgcttttttatatattgagaaa 9588823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 32745744 - 32745850
Alignment:
Q  56 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 155  Q
    ||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||    
T  32745744 tcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaagaggtagttttgataggatggagaaggcaatatcatcaggtatat 32745843  T
Q  156 aggtggt 162  Q
    || ||||    
T  32745844 agttggt 32745850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 32973513 - 32973639
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 150  Q
    |||| ||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||  |||||| ||| |||||||     
T  32973513 ggttttcagataagagagaccatgatttacaaacacattcaaaacgcttgaaagatttaagaggcaattttgatagaatatagaaggaaatttcatcaga 32973612  T
Q  151 tatataggtggtgctaaccttttcatt 177  Q
     ||||| |||||||| |||||||||||    
T  32973613 aatatatgtggtgctcaccttttcatt 32973639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 29123320 - 29123217
Alignment:
Q  56 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 155  Q
    ||||| ||||||||||||| ||| | |||| |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  29123320 tcagacaagagagaccatgatttgcgaacggattcaactcgtttaaaagatttaagaggcaattttgatagaatggagaaggcaatatcatcagatatat 29123221  T
Q  156 aggt 159  Q
    ||||    
T  29123220 aggt 29123217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 29144456 - 29144359
Alignment:
Q  60 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 157  Q
    |||||||| |||| | ||||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||    
T  29144456 ataagagataccaagatttacgaacgcatccaaatcgcttcaaagatttaagaggcaatttcgatagaatggataaggcaatatcatcgagtatatag 29144359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 34279400 - 34279500
Alignment:
Q  56 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 155  Q
    |||||||| ||| |||||| ||||||||| |||||||| | ||| |||||||||||||| ||||| || ||||||||||||||||||||||||| |||||    
T  34279400 tcagataaaagataccatgatttacaaacacattcaaaactcttgaaagatttaagaggtaattttgaaagaatggagaaggcaatatcatcagatatat 34279499  T
Q  156 a 156  Q
    |    
T  34279500 a 34279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 29130487 - 29130392
Alignment:
Q  62 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 157  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||| || || ||||||||||||  |||||||| ||||||||||    
T  29130487 aagagagaccatgatttacgaacggattcaaatcgcttgaaagatttaagaggcaactttgagagaatggagaagtgaatatcatgaggtatatag 29130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 29149753 - 29149844
Alignment:
Q  56 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 147  Q
    ||||| ||||||||||||| ||| | ||||||||||||||  ||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  29149753 tcagacaagagagaccatgatttgcgaacgcattcaaatcagttaaaagatttaagaggcaattttgagagaatggagaaggctatatcatc 29149844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 29152965 - 29153087
Alignment:
Q  56 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 155  Q
    ||||||| ||| ||||||| ||| | ||| ||||||||  |||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||| |    
T  29152965 tcagataggagggaccatgatttgcgaacacattcaaaatgcttgaaagatttaagaggcaattttgagagaatggagaaggcaatatcatcagatatgt 29153064  T
Q  156 aggtggtgctaaccttttcattc 178  Q
    | |  ||||| ||||||||||||    
T  29153065 atgctgtgctcaccttttcattc 29153087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 34259145 - 34259241
Alignment:
Q  60 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 156  Q
    ||||||||||||||| ||||| ||||||| |||||||||| ||||| |||||||| | ||||  |||||| |||||||||||||||| |||||||||    
T  34259145 ataagagagaccatgatttacgaacgcatccaaatcgctttaaagacttaagaggtagtttgtgtagaatagagaaggcaatatcatgaggtatata 34259241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 21379332 - 21379429
Alignment:
Q  60 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 157  Q
    ||||||||||||||| |||||  |||||| |||||||||| |||||||||||||| || || |||||||| |||||| | ||||||||| ||| ||||    
T  21379332 ataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaatagagaagactatatcatcatgtaaatag 21379429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 34281106 - 34281021
Alignment:
Q  89 tcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggtggtgctaaccttttc 174  Q
    ||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||| ||| || | |||||| ||||||||    
T  34281106 tcaaaacgcttgaaagatttaagaggcaattttgagagaatagagaaggcaatatcatcagatatgtatgcggtgctcaccttttc 34281021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 29299237 - 29299150
Alignment:
Q  62 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcag 149  Q
    ||||||||||||| ||| | ||| |||||||| ||||||||||||||||||||||| || || |||||||| || || ||||||||||    
T  29299237 aagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaagaggcaactttgagagaatggaaaaagctatatcatcag 29299150  T

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Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 23216862 - 23216958
Alignment:
Q  61 taagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 157  Q
    |||||||||||||| ||| | ||| |||||||||| ||| |||||||||||||| || || ||||||||||| |||   ||||| ||||||||||||    
T  23216862 taagagagaccatgatttgcgaacacattcaaatctcttcaaagatttaagaggtaacttcgatagaatggataagcttatatcgtcaggtatatag 23216958  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 29136466 - 29136409
Alignment:
Q  60 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaa 117  Q
    ||||||||||||||| ||| |||||||||||||  ||||| |||||||||||||||||    
T  29136466 ataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaa 29136409  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 21375240 - 21375340
Alignment:
Q  60 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 159  Q
    ||||||| ||||||| |||| | |||||| |||||| ||| |||||||||||||  ||||| |||||||| ||||||   ||||||||| ||| ||||||    
T  21375240 ataagagggaccatgatttatagacgcatccaaatcacttcaaagatttaagagataatttcgatagaatagagaagagtatatcatcatgtaaataggt 21375339  T
Q  160 g 160  Q
    |    
T  21375340 g 21375340  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 25320185 - 25320290
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 150  Q
    |||| ||| ||||||| ||||||| ||| | ||  |||| ||||||||||||||||||||| ||||| || |||||||| || | ||| |||||||| |     
T  25320185 ggttctcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctga 25320284  T
Q  151 tatata 156  Q
    ||||||    
T  25320285 tatata 25320290  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 26149878 - 26149983
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 150  Q
    |||| ||| ||||||| ||||||| ||| | ||  |||| ||||||||||||||||||||| ||||| || |||||||| || | ||| |||||||| |     
T  26149878 ggttctcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctga 26149977  T
Q  151 tatata 156  Q
    ||||||    
T  26149978 tatata 26149983  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 2742756 - 2742806
Alignment:
Q  70 ccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaattt 120  Q
    ||||| |||||| |||||| |||||||||| |||||||| |||||||||||    
T  2742756 ccatgatttacatacgcatccaaatcgctttaaagattttagaggcaattt 2742806  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 13339241 - 13339136
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 150  Q
    |||| ||| ||||||| ||||||| ||| | |||||||  |||||| |  |||||||||||||| | |||||||||||| | ||||| ||| ||||| |     
T  13339241 ggttttcaaataagagtgaccatgatttgcgaacgcatcgaaatcggtacaaagatttaagaggaagtttggatagaatcgtgaaggaaatgtcatctga 13339142  T
Q  151 tatata 156  Q
    ||||||    
T  13339141 tatata 13339136  T

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Target: scaffold0134 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 17144 - 17237
Alignment:
Q  61 taagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtata 154  Q
    |||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| |||  |||||| |||||||||    
T  17144 taagagagaccatgatttgcaaacgcattcaaatctcttcaaagatttaagaggcaactttgatagaatggataagctaatatcgtcaggtata 17237  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 42445505 - 42445421
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaa 135  Q
    |||| |||||||||||||||||   ||||| ||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  42445505 ggttttcagataagagagaccacaatttacgaacacattcaaatcgcttaaaagatttaagaggtaattttgatataatggagaa 42445421  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 7436173 - 7436239
Alignment:
Q  87 attcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtat 153  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||  |||| ||||||||||||    
T  7436173 attcaaatcgcttcaaagatttaagaggcaaatttgatagaatggagattgcaacatcatcaggtat 7436239  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 7524980 - 7525065
Alignment:
Q  68 gaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtat 153  Q
    |||||||||||| | ||  ||||||||||||  |||||||||||||||||||| ||||||||||| || |||| ||| ||||||||    
T  7524980 gaccatggtttagatacagattcaaatcgctgcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtat 7525065  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 31135828 - 31135955
Alignment:
Q  19 gagattgttgcagaatgtgttcataaaactacggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaat 118  Q
    ||||||||||| |||  ||||||||||| || |||| ||| |||| |||||||||||||| || || ||| |||||||||| ||  |||| | ||||||     
T  31135828 gagattgttgcggaacatgttcataaaaatagggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaaaggcaac 31135927  T
Q  119 ttggatagaatggagaaggcaatatcat 146  Q
    ||||| | ||| ||||||| ||||||||    
T  31135928 ttggagataatagagaaggaaatatcat 31135955  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 40548457 - 40548366
Alignment:
Q  56 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 147  Q
    ||||||| | ||||||||| |||||  | ||||||||||||||| |||||||||| ||| | |||  |||||||||| ||||||||||||||    
T  40548457 tcagataggtgagaccatgatttacttatgcattcaaatcgcttcaaagatttaacaggaagtttttatagaatggaaaaggcaatatcatc 40548366  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 42777192 - 42777087
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 150  Q
    |||||||| ||||||||||||||| ||| || || ||||||||||| ||    ||||||| ||| ||||| || ||||| ||||| |||||||||||| |    
T  42777192 ggttatcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaatatcatcatg 42777093  T
Q  151 tatata 156  Q
    ||||||    
T  42777092 tatata 42777087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 42405897 - 42405805
Alignment:
Q  64 gagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 156  Q
    |||| |||||| |||||  |||| |||||||||||| |||||||||| ||||| ||| || | ||| || |||||||||||||| ||||||||    
T  42405897 gagataccatgatttacgtacgctttcaaatcgctttaaagatttaacaggcagtttcgacataatagataaggcaatatcatctggtatata 42405805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 31788704 - 31788623
Alignment:
Q  66 gagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 147  Q
    ||||||||| ||| |  |||||||||||||| || ||||||||||  || | ||| |||||||| |||||||||||||||||    
T  31788704 gagaccatgatttgcgtacgcattcaaatcgtttcaaagatttaatggggagttttgatagaatagagaaggcaatatcatc 31788623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 37512084 - 37512003
Alignment:
Q  66 gagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 147  Q
    ||||||||| ||| || ||  |||||||||| || |||||||| ||||||| ||| |||| ||||||||||||||| |||||    
T  37512084 gagaccatgatttgcatacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaatgtcatc 37512003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 40544314 - 40544233
Alignment:
Q  66 gagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 147  Q
    ||||||||| ||| |  |||||||||||||| || |||||||||| ||| | ||| |||||||| |||||||||| ||||||    
T  40544314 gagaccatgattttcttacgcattcaaatcgtttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatc 40544233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 32642077 - 32642005
Alignment:
Q  87 attcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 159  Q
    |||||||| |||  |||||||||||||| ||||| |||||||| || |||| |||||||||  ||||||||||    
T  32642077 attcaaattgctacaaagatttaagaggtaattttgatagaattgaaaaggtaatatcatcgtgtatataggt 32642005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 39725456 - 39725522
Alignment:
Q  86 cattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggta 152  Q
    |||||||||||||| |||||||| | ||| | ||| || ||||| |||||| |||||||||||||||    
T  39725456 cattcaaatcgcttcaaagatttgaaaggaagttttgacagaatagagaagacaatatcatcaggta 39725522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 42841468 - 42841568
Alignment:
Q  53 ttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggta 152  Q
    |||||| |||| |||||||||| ||||   |||||||||||| |||| ||||||| || ||| | ||| || |||||  ||||| |||||||||| ||||    
T  42841468 ttatcaaataatagagaccatgatttatgtacgcattcaaatggcttcaaagattcaatagggagttttgagagaatatagaagacaatatcatcgggta 42841567  T
Q  153 t 153  Q
    |    
T  42841568 t 42841568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 34343 - 34436
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatc 144  Q
    |||| ||| ||||||| ||||||| ||||| |||||||  |||||| || |||||||||||||| | |||||||||||| | ||||| ||||||    
T  34343 ggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagatttaagagggagtttggatagaattgtgaaggaaatatc 34436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 40700 - 40793
Alignment:
Q  51 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatc 144  Q
    |||| ||| ||||||| ||||||| ||||| |||||||  |||||| || ||||||| |||||| | |||||||||||| | ||||| ||||||    
T  40700 ggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagattgaagagggagtttggatagaatcgtgaaggaaatatc 40793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 9619 - 9564
Alignment:
Q  91 aaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcat 146  Q
    |||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||    
T  9619 aaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcat 9564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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