View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11801_low_10 (Length: 352)
Name: NF11801_low_10
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 32184181 - 32184502
Alignment:
| Q |
14 |
agatccaataggttgttcatcaagccacttggtcaatggtggtgattctgatgatgtttctttttgactttctttctcaaactcaagaggaacaaaagga |
113 |
Q |
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| T |
32184181 |
agatccaataggttgttcatcaagccacttggtcaatggtggtgattctgatgatgtttccttttgactttctttctcaaactcaagaggaacaaaagga |
32184280 |
T |
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| Q |
114 |
ccaacagcataaacaggaggcattcctttaacaacttctccattattaagagcttgtagtgaatgagattcaagtgcttcaaaggagttgagaaaaacac |
213 |
Q |
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| T |
32184281 |
ccaacagcataaacaggaggcattcctttaacaacttctccattattaagagcttgtagtgaatgagattcaagtgctttaaaggtgttgagaaaaacac |
32184380 |
T |
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| Q |
214 |
cttgtagttttgttaggttaggactatcttccatcataagatttctaaatatggttggcttgaaaagaatcggtgggatagatgaatatggtaaaggtga |
313 |
Q |
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| T |
32184381 |
cttgtagttttgttaggttaggactatcttccatcataagatttctgaatatggtaggcttgaaaagaatcggtgggatagatgaatatggtaaaggtga |
32184480 |
T |
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| Q |
314 |
aaatgcaatacctggaactggt |
335 |
Q |
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| T |
32184481 |
aaatgcaatacctggaactggt |
32184502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 85 - 332
Target Start/End: Original strand, 32177073 - 32177323
Alignment:
| Q |
85 |
ctttctcaaactcaagaggaacaaaaggaccaacagcataaacaggaggcattcctttaacaacttctccattattaagagcttgtagtgaatgagattc |
184 |
Q |
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| T |
32177073 |
ctttttcaaactcaaaaggaacaaaaggaccaactgcataaacaggaggcatatttttgacaacttttccactattaagagcctctagtgaatgagactc |
32177172 |
T |
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| Q |
185 |
aagtgcttcaaaggagttgagaaaaacaccttgtagttttgttaggttaggactatcttccatcataagatttctaaatat---ggttggcttgaaaaga |
281 |
Q |
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| T |
32177173 |
aagtgcttcaaaagtgttggcaaaaacaccgtgtaagtaaacgagcttaggactatcttccatcgcaaggtttctcaatatagaagtaggttggagaaga |
32177272 |
T |
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| Q |
282 |
atcggtgggatagatgaatatggtaaaggtgaaaatgcaatacctggaact |
332 |
Q |
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| T |
32177273 |
aatggtgggatagatgaatatggtaaaggtgaaaatggaatgcctggaact |
32177323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 21004025 - 21003956
Alignment:
| Q |
60 |
tctgatgatgtttctttttgactttctttctcaaactcaagaggaacaaaaggaccaacagcataaacag |
129 |
Q |
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| T |
21004025 |
tctgatgatgtttccttttgattttctttctcaagttcaagaggaacaaaaggacaaacaccagaaacag |
21003956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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