View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11801_low_11 (Length: 347)
Name: NF11801_low_11
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 49016679 - 49016351
Alignment:
| Q |
19 |
actctatcatagctcgtccttggtatgtttttcttctttggtgttaacagcacgcctacaaacccttgcatccttataaatcctgcctggtctacagaag |
118 |
Q |
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| T |
49016679 |
actctatcatagctcgtccttggtatgtttttcttcttaggtgttaacaccacgcctacaaacccttgcatccttataaatcctgcctggtctacagaag |
49016580 |
T |
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| Q |
119 |
taacggtttttcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaa |
218 |
Q |
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| T |
49016579 |
taactgtttttcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaa |
49016480 |
T |
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| Q |
219 |
gcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcc |
318 |
Q |
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| T |
49016479 |
gcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttacggattgctcc |
49016380 |
T |
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| Q |
319 |
cacaaatcctaagtttctatttttccccc |
347 |
Q |
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| T |
49016379 |
cacaaatcctaagtttctatttttccccc |
49016351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 46 - 249
Target Start/End: Original strand, 490102 - 490305
Alignment:
| Q |
46 |
tttttcttctttggtgttaacagcacgcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaacggtttttcggtgcacagtgagta |
145 |
Q |
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| T |
490102 |
tttttcttcttaagttttaacatgaagcctacaaacccttgcatccttatagattctgcctggtctgcagaagtagttcttttttggtgaacaatgacta |
490201 |
T |
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| Q |
146 |
tcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactagaga |
245 |
Q |
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| T |
490202 |
tcttttgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaatcactagaga |
490301 |
T |
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| Q |
246 |
aaag |
249 |
Q |
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|||| |
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| T |
490302 |
aaag |
490305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 285
Target Start/End: Complemental strand, 9072257 - 9072116
Alignment:
| Q |
144 |
tatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactaga |
243 |
Q |
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|||||||||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| | ||||| |||||| |
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| T |
9072257 |
tatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatgtactaga |
9072158 |
T |
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| Q |
244 |
gaaaagacctcgtgaatcatactcttctttaaccttcaaaaa |
285 |
Q |
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|||||| ||| |||||||||| | ||||||||||||||||| |
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| T |
9072157 |
gaaaagtccttgtgaatcatatttctctttaaccttcaaaaa |
9072116 |
T |
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