View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11801_low_12 (Length: 304)
Name: NF11801_low_12
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 1623580 - 1623283
Alignment:
| Q |
1 |
tttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623580 |
tttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacc |
1623481 |
T |
|
| Q |
101 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623480 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggcc |
1623381 |
T |
|
| Q |
201 |
ttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacaggttctgctc |
298 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
1623380 |
ttggcaacaattctcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctc |
1623283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1629756 - 1629470
Alignment:
| Q |
1 |
tttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacc |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
1629756 |
tttggcaacgccgcagtggtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcactgcccaaggtcgaggtgacc |
1629657 |
T |
|
| Q |
101 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
|
|
| T |
1629656 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaaacctgttgttgacaagtacaaaaccttcttgggcagacc |
1629557 |
T |
|
| Q |
201 |
ttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacac |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629556 |
ttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacac |
1629470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 10820942 - 10821228
Alignment:
| Q |
1 |
tttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
10820942 |
tttggcaacgctgcagtggtattccaaaattgcaacattttcgcaagaaaacctttagatggccaagctaacatgatcactgcccaaggtcgaggtgatc |
10821041 |
T |
|
| Q |
101 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
10821042 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttaggaagacc |
10821141 |
T |
|
| Q |
201 |
ttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacac |
287 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10821142 |
ttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtctccatggggtgacac |
10821228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1606458 - 1606172
Alignment:
| Q |
1 |
tttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacc |
100 |
Q |
| |
|
|||||||| || ||||| || |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1606458 |
tttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacc |
1606359 |
T |
|
| Q |
101 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1606358 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggcc |
1606259 |
T |
|
| Q |
201 |
ttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacac |
287 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
1606258 |
ttggcaacaatattcaagagttatggtgatgaaaactttcatggacactttagtaagccccctgggttggtctccatggggtgacac |
1606172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 18781274 - 18780988
Alignment:
| Q |
1 |
tttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacc |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
18781274 |
tttggcaacgccgcagtagtgttccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggtcgaggtgacc |
18781175 |
T |
|
| Q |
101 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18781174 |
cattccaaaacactggaatttcattccacaattgtcaaattatggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggcc |
18781075 |
T |
|
| Q |
201 |
ttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacac |
287 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18781074 |
ttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacac |
18780988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 12802840 - 12802560
Alignment:
| Q |
1 |
tttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacc |
100 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| | ||| | | |||| |||||| | |||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
12802840 |
tttggcaacgcagccgtagttttccaaaactgcatgattcttgttagaaggcctttaaacggccaagcaaacatgatcacggcccaaggtcgtgatgacc |
12802741 |
T |
|
| Q |
101 |
cattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggcc |
200 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| | ||| |||||||| || ||||| | ||||| ||||| | || | ||| ||||||||||| |||| |
|
|
| T |
12802740 |
catttcaaaacactggaatttcgattcacaactctcagattagggccgcgccagatttcaagcccgttgtcgggaaattcaacaccttcttgggccggcc |
12802641 |
T |
|
| Q |
201 |
ttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatgggg |
281 |
Q |
| |
|
|||||| ||| || ||||| |||| |||||| | || ||||| | ||| || || || | ||||||||||||||||| |
|
|
| T |
12802640 |
ctggcaaagatactctagagttgtggtcatgaaatcattcatggataatttggtcagtccaatgggttggtctccatgggg |
12802560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University