View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11801_low_16 (Length: 229)
Name: NF11801_low_16
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 1738445 - 1738226
Alignment:
| Q |
7 |
ttttggtcctacaaatgtcagaataacaaatggagtctcaagtggttgatcgaaaatggttacataaggctctagatgtaaggggttcttctttcccatg |
106 |
Q |
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| T |
1738445 |
ttttggtcctataaatgtcagaataacaaatggagtctcaagtggttgatcgaaaatggttacataaagctctagatgtaaggggttcttgtttccca-g |
1738347 |
T |
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| Q |
107 |
ccattggagtctcaaatacacttttaaacaatttgtgtcgagagatgcacactttcaaagatatgagtttttgagtagcaaaggcagggaaaagaagtgc |
206 |
Q |
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| T |
1738346 |
ccattggagtctcaaatacacttttaaacaatttgtgtcgagagatgcacactttcaaagatatgagattttgagtagcaaaggcagggaaaagaagtgc |
1738247 |
T |
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| Q |
207 |
atatatatatagttatcaatc |
227 |
Q |
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| T |
1738246 |
atatatatatagttatcaatc |
1738226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 1717037 - 1716828
Alignment:
| Q |
9 |
ttggtcctacaaatgtcagaataacaaatggagtctcaagtggttgatcgaaaatggttacataaggctctagatgtaa-ggggttcttctttcccatgc |
107 |
Q |
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|||| ||||||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||| | || |
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| T |
1717037 |
ttgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaaggggttcttctttctccggc |
1716938 |
T |
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| Q |
108 |
cattggagtctcaaatacacttttaaacaatttgtgtcgagagatgcacactttcaaagatatga--gtttttgagtagcaaaggcagggaaaagaagtg |
205 |
Q |
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| T |
1716937 |
cattacagtctcaagtacacttttaaataatttgtgtcgagatatgcacacttttaaagatacgagggtttttgagcagcaaaggcggggaaatgaagtg |
1716838 |
T |
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| Q |
206 |
catatatata |
215 |
Q |
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| T |
1716837 |
cttatatata |
1716828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 1753582 - 1753505
Alignment:
| Q |
16 |
tacaaatgtcagaataacaaatggagtctcaagtggttgatcgaaaatggttacataaggctctagatgtaaggggtt |
93 |
Q |
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| T |
1753582 |
tacaaatgtcaatataaccattggagtctcaagtggatgatcgagaatggttacataaagctctagatgtaaggggtt |
1753505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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