View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11801_low_18 (Length: 203)
Name: NF11801_low_18
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 6e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 1623781 - 1623940
Alignment:
| Q |
20 |
catcaatgcctaaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgctagacaagttgca |
119 |
Q |
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| T |
1623781 |
catcaatgcctgaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgttagacaagttgca |
1623880 |
T |
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| Q |
120 |
agaaagccattagacacttatgaatatcatatatagctatgatataaagagcacatttcc |
179 |
Q |
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| T |
1623881 |
agaaagccattagagaattatgaatatcatatatagctatgatataaagagcacatttcc |
1623940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 1606659 - 1606821
Alignment:
| Q |
20 |
catcaatgcctaaatttaaaagattcaagagaaatatgtaaaaa-ttagaaactataaataacattctaaactcta--aagtgttcgtgctagacaagtt |
116 |
Q |
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||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| | ||||| |
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| T |
1606659 |
catcaatacctaaatttaaatgatccaagagaaatatgtaaaaaattagaaactataaataacaatctaaactctataaagtgttcgtgctacataagtt |
1606758 |
T |
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| Q |
117 |
gcaagaaagccattagacacttatgaatatcatatatagctatgatataaagagcacatttcc |
179 |
Q |
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| T |
1606759 |
gcaagaaagccattagaccagtatgaatatcatatatacctatgatataaagagcacatttcc |
1606821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 18781475 - 18781563
Alignment:
| Q |
20 |
catcaatgcctaaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgcta |
108 |
Q |
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| T |
18781475 |
catcaatgcctgaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacaatctaaactctaaagtgtccgtgcta |
18781563 |
T |
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