View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11801_low_2 (Length: 752)
Name: NF11801_low_2
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 277 - 738
Target Start/End: Original strand, 18201377 - 18201839
Alignment:
| Q |
277 |
ttacagggacaatttacatatttaagcctaaaaatattataaccgatccacaaaattattattgacaggttttgtataagttgttcgtctagttttaaca |
376 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18201377 |
ttacagggacaatttacatatttaagcttaaaaatattataaccgatccacaaaattattatagacaggttttgtataagttgttcgtctagttttaaca |
18201476 |
T |
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| Q |
377 |
agatttcttgccatctaaagaacaaaattatcttttatatgcactactttctaactatcctatatgaatggatgttaaaaaataaatcttacatgaatag |
476 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18201477 |
agatttcttgccatctaaagaacaaaatcatcttttatatgcactactttctaactatcctatatgaatggatgttaaaaaataaatcttacatgaatag |
18201576 |
T |
|
| Q |
477 |
gagttgcagctatcattgatctaccaatacctcctccaaaaatactgccatcaggtttagacaagtaaacactcatcatttcaatttccttctgtgcaca |
576 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18201577 |
gagtagcagctatcattgatctaccaataccacctccaaaaatactgccatcaggtttagacaaggaaacactcatcatttcaatttccttctgtgcaca |
18201676 |
T |
|
| Q |
577 |
aacaccagggaaggtgcatggtccatttaaagataaaataggaaagtggccctgtattataacggagaaaattttaaaacatatagaaacac-nnnnnnn |
675 |
Q |
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| T |
18201677 |
accaccagggaaggtgcatggtccatttaaagatagaataggaaagtggccctgtattataacggagaaaattttaaaacatatagaaacacaaaaaaaa |
18201776 |
T |
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| Q |
676 |
tgaaagtggccttgtattatagaagattaattgcttttataattttacctcatatcttaaaaa |
738 |
Q |
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| T |
18201777 |
tgaaagtggccttgtattatagaagattaattgcttttataattttacctcatatcttaaaaa |
18201839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 18201095 - 18201333
Alignment:
| Q |
5 |
atggacatcatggaaatggaaggaattaacaataagtannnnnnnacaaccaggtataaaattttctcagttgtttagttcagactaatcttcgtttagg |
104 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18201095 |
atggacaacatggaaatggaaggaattaactataagtatttttttacaaccaggtataaaattttctcagttgtttagttcagactaatcttcgtttaga |
18201194 |
T |
|
| Q |
105 |
aatctattaaacatacaaggtcatttgcca----------cgtcacgtcatcctctgttttccacatagacgnnnnnnnagcagatgatgacgacagaga |
194 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
18201195 |
aatctattaaacatacaaggtcatttgcgacgtcacacatcgtcacgtcatcctctgttttccacatagacgtttttgtagcagatgatgacgacagaaa |
18201294 |
T |
|
| Q |
195 |
ctaaaaccattatatttataacttacaggagttgtttcg |
233 |
Q |
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| T |
18201295 |
ctaaaaccattatatttataacttacaggagttgtttcg |
18201333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 316
Target Start/End: Complemental strand, 33981527 - 33981492
Alignment:
| Q |
281 |
agggacaatttacatatttaagcctaaaaatattat |
316 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
33981527 |
agggacgatttacatatttaagcctaaaaatattat |
33981492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 33257908 - 33257867
Alignment:
| Q |
277 |
ttacagggacaatttacatatttaagcctaaaaatattataa |
318 |
Q |
| |
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|||||||||| |||||||||||||||||| |||| ||||||| |
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| T |
33257908 |
ttacagggacgatttacatatttaagccttaaaaaattataa |
33257867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 33278080 - 33278039
Alignment:
| Q |
277 |
ttacagggacaatttacatatttaagcctaaaaatattataa |
318 |
Q |
| |
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|||||||||| |||||||||||||||||| |||| ||||||| |
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| T |
33278080 |
ttacagggacgatttacatatttaagccttaaaaaattataa |
33278039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 21715099 - 21715065
Alignment:
| Q |
277 |
ttacagggacaatttacatatttaagcctaaaaat |
311 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
21715099 |
ttacagggacgatttacatatttaagcctaaaaat |
21715065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 26719511 - 26719458
Alignment:
| Q |
178 |
gatgatgacgacagagactaaaaccattatatttataacttacaggagttgttt |
231 |
Q |
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||||||||||||| ||| ||||||| | |||||||||||||||||||||||| |
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| T |
26719511 |
gatgatgacgacaaggaccaaaaccaaaacatttataacttacaggagttgttt |
26719458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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