View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11801_low_3 (Length: 682)
Name: NF11801_low_3
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 646; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 19 - 672
Target Start/End: Original strand, 33915688 - 33916341
Alignment:
| Q |
19 |
tttggtaggtactctaaactcgaaacttttcagatttcatctaatagtttcaatggaaggttaccagaaaatttgtgctatcatggaaggttagttggtt |
118 |
Q |
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| T |
33915688 |
tttggtaggtactctaaactcgaaacttttcagatttcatctaatagtttcaatggaaggttaccagaaaatttgtgctatcatggaaggttagttggtt |
33915787 |
T |
|
| Q |
119 |
taatggtttttgacaataatctgagtggtgagttgccaaaatctttaggtagttgtagcagtttacagtatctgagagttgagaacaatgagttttctgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33915788 |
taatggtttttgacaataatctgagtggtgagttgccaaaatctttaggtagttgtagcagtttacagtatctgagagttgagaacaatgagttttctgg |
33915887 |
T |
|
| Q |
219 |
taacattcctaatggtttatggacatctatgaatttgtcgcaacttatgttaagtgagaacaaattcaccggtgagcttcccgaaagattgtctcagaat |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33915888 |
taacattcctaatggtttatggacatctacgaatttgtcgcaacttatgttaagtgagaacaaattcaccggtgagcttcccgaaagattgtctcagaat |
33915987 |
T |
|
| Q |
319 |
ctttcaacactagccataagttataatcggttttctggtagaattccaaatggagtttcttcttggaagaatgtagtgaagttcaatgctagtaacaact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33915988 |
ctttcaacactagccataagttataatcggttttctggtagaattccaaatggagtttcttcttggaagaatgtagtgaagttcaatgctagtaacaact |
33916087 |
T |
|
| Q |
419 |
ttttcaatggaagtattccattagagttaacatctcttcctcagttagaaactcttctactcgatcagaaccagctcaccggtcaaattccatcggatat |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33916088 |
ttttcaatggaagtattccattagagttaacatctcttcctcggttagaaactcttctactcgatcagaaccagctcaccggtcaaattccatcggatat |
33916187 |
T |
|
| Q |
519 |
aacatcatggaagtctctagtaacattaaacttgagccacaatcaactatctggagaaatacctgatgcaatttgtcggttacgttcacttagtatgtta |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33916188 |
aacatcatggaagtctctagtaacattaaacttgagccacaatcaactatctggagaaatacctgatgcaatttgtcggttacgttcacttagtatgtta |
33916287 |
T |
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| Q |
619 |
gacttatcagaaaaccagatctcaggccgaattccgcctcaactagcacctatg |
672 |
Q |
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| T |
33916288 |
gacttatcagaaaaccagatctcaggccgaattccgcctcaactagcacctatg |
33916341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 343 - 591
Target Start/End: Complemental strand, 24792365 - 24792117
Alignment:
| Q |
343 |
aatcggttttctggtagaattccaaatggagtttcttcttggaagaatgtagtgaagttcaatgctagtaacaactttttcaatggaagtattccattag |
442 |
Q |
| |
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|||| ||||||||||||||||||| ||| || ||||| |||| ||||| || || ||||| || ||||| || || ||||||||||||||| || |
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| T |
24792365 |
aatcagttttctggtagaattccatctggtgtatcttcatggactaatgtggtagtttttaatgcaaggaacaatttcttaaatggaagtattccacaag |
24792266 |
T |
|
| Q |
443 |
agttaacatctcttcctcagttagaaactcttctactcgatcagaaccagctcaccggtcaaattccatcggatataacatcatggaagtctctagtaac |
542 |
Q |
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|||||||||| ||||| | ||| ||||||| | || |||||||| ||| |||| |||||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
24792265 |
agttaacatcacttccaaaattaacaactcttttgcttgatcagaatcagttcactggtcaaattccatctgatataatatcatggaagtccttagtaac |
24792166 |
T |
|
| Q |
543 |
attaaacttgagccacaatcaactatctggagaaatacctgatgcaatt |
591 |
Q |
| |
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| || |||||||| || ||||| |||||| |||| || ||||||||| |
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| T |
24792165 |
tcttaatttgagccagaaccaactttctggacaaattccagatgcaatt |
24792117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 385
Target Start/End: Original strand, 33909159 - 33909210
Alignment:
| Q |
334 |
ataagttataatcggttttctggtagaattccaaatggagtttcttcttgga |
385 |
Q |
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||||||||||||| ||||||||| ||||||||| |||||| |||||||||| |
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| T |
33909159 |
ataagttataatcaattttctggtggaattccaattggagtatcttcttgga |
33909210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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