View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11801_low_4 (Length: 502)
Name: NF11801_low_4
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 21879391 - 21878907
Alignment:
| Q |
1 |
aagcaaatgatgagcataccaaaaggaattgaatccggccaaatgatgcaacggcgaaggtaacgtgacaacgctttttctaaagtaatgagttgccaaa |
100 |
Q |
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| T |
21879391 |
aagcaaatgatgagcataccaaaaggaattgaatccggccaaatgatgcaacggcgaaggtaacgtgacaacgctttttctaaagtaatgagttgccaaa |
21879292 |
T |
|
| Q |
101 |
gtgaaagaaaaagccataatcaagaccatgaaaattccagttataccaggaggacttgtaacaagggtcaagtaactaggctgcttataatcaaaactgg |
200 |
Q |
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| T |
21879291 |
gtgaaagaaaaagccataatcaagaccatgaaaattccagttataccaggaggacttgtaacaagggtcaagtaactaggctgcttataatcaaaaccgg |
21879192 |
T |
|
| Q |
201 |
atccaagtatcgccataaatttttcggtcggacaagaaactaatcttggaaaatcacaagatacatgcacacctacatggattaaagttcctataactac |
300 |
Q |
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| T |
21879191 |
atccaagtatcgccataaatttttcggtcggacaagaaactaatcttggaaaatcacaagatacatgcacacctacatggattaaagttcctataactac |
21879092 |
T |
|
| Q |
301 |
gccaactgcaatgattttatgaaagtttatgttgtcatcaaaaggaatgatttgactaagaaatgttcctcgtaactttgtaagtgttcttctacacatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21879091 |
gccaactgcaatgattttatgaaagtttatgttgtcatcaaaaggaatgatttgactaagaaatgttcctcgtaactttgtaagtgttcttctacacatt |
21878992 |
T |
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| Q |
401 |
gtaaggacaattagagccatgttgaatttgagagtctcagcagaaccctttgcaaaacatagacatgatcccattacttcatatg |
485 |
Q |
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| T |
21878991 |
gtaaggacaattagagccatgttgaatttgagagtctcagcagaaccctttgcaaaacatagacatgatcccattacttcatatg |
21878907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 46562226 - 46562263
Alignment:
| Q |
416 |
gccatgttgaatttgagagtctcagcagaaccctttgc |
453 |
Q |
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||||||||||| |||||||||||||||| ||||||||| |
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| T |
46562226 |
gccatgttgaacttgagagtctcagcagcaccctttgc |
46562263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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