View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11801_low_6 (Length: 432)
Name: NF11801_low_6
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_6 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 204 - 417
Target Start/End: Original strand, 47649424 - 47649631
Alignment:
| Q |
204 |
accaactatggtcatttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagt |
303 |
Q |
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| T |
47649424 |
accaactatggtcatttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagt |
47649523 |
T |
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| Q |
304 |
tgcctttgactctcttcaaataacatatttgccgtcatttcttccctcatgtttctctccttttcgagttgagtctctacgtcttttaacttcatctcta |
403 |
Q |
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| T |
47649524 |
tgccttagactctcttcaaat------tttgccgtcatttcttccctcatgtttcgctccttttcgagttgagtctctacttcttttaacttcatctcta |
47649617 |
T |
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| Q |
404 |
taccttgtcttttt |
417 |
Q |
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||||||||||||| |
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| T |
47649618 |
aaccttgtcttttt |
47649631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 47649237 - 47649352
Alignment:
| Q |
17 |
acaatttctctgaagtggtgttattatccttgtgagcaagctcggacattatattaagtgcactacaaaattgtccaccgataccctatagaaatattca |
116 |
Q |
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| T |
47649237 |
acaatttctctgaagtggtgttattatccttgtgagcacgctcggacattatattaagtgcactacaaaattgtccaccgataccctatagaaatattca |
47649336 |
T |
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| Q |
117 |
aaataacacccatgac |
132 |
Q |
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| T |
47649337 |
aaataacgcccatgac |
47649352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 217 - 417
Target Start/End: Original strand, 91601 - 91795
Alignment:
| Q |
217 |
atttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagttgcctttgactct |
316 |
Q |
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| T |
91601 |
atttatatacttactttgaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttcccctagttgcctttgactct |
91700 |
T |
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| Q |
317 |
cttcaaataacatatttgccgtcatttcttccctcatgtttctctccttttcgagttgagtctctacgtcttttaacttcatctctataccttgtctttt |
416 |
Q |
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| T |
91701 |
cttcaaat------tttgccgtcatttcttccctcatgtttcgctcttttccgagttgagtctcaacttcttttaacttcatctctaaatcttgactttt |
91794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 91443 - 91540
Alignment:
| Q |
35 |
tgttattatccttgtgagcaagctcggacattatattaagtgcactacaaaattgtccaccgataccctatagaaatattcaaaataacacccatgac |
132 |
Q |
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| T |
91443 |
tgttattatccttgtgaacaagttcatacattatattaagtgcactagaaaattgtccaccgataccctataaaaatattcaaaataacacccatgac |
91540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 30753346 - 30753404
Alignment:
| Q |
18 |
caatttctctgaagtggtgttattatccttgtgagcaagctcggacattatattaagtg |
76 |
Q |
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| T |
30753346 |
caatttctctgaagtcgtgttattatccttatgaacaagttcagacattatcttaagtg |
30753404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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