View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11801_low_8 (Length: 401)
Name: NF11801_low_8
Description: NF11801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11801_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 13203004 - 13203357
Alignment:
| Q |
19 |
attaccccattgtaaggactctttcccagtgttaatcacctgaggatggtnnnnnnnggaaatacaattaacagaaaaacaccacacaattaatatgata |
118 |
Q |
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| T |
13203004 |
attaccccattgtaaggactctttcccagtgttaatcacctgaggatgggaaaaaaaggaaatacaattaatagaaaaacaccacacaattaatatgata |
13203103 |
T |
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| Q |
119 |
taagactcacctgaattatctcatatcattatcaacatctcaagttttgctcacaacgtgcttaatttagagggaaaagtatgtataatgtacaatcata |
218 |
Q |
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| T |
13203104 |
taagactcacctgaattatctcatatcattatcaacatctcaagttttgctcacaacgtgcttaatttagagggaaaagtatgtataatgtacaatcata |
13203203 |
T |
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| Q |
219 |
taaaagattataaactaagtaactcaccatggcatcgagggatttgttactggtctctcctaattacacnnnnnnnnnnnnnngaggaaatgttaatact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
13203204 |
taaaagattataaactaagtaactcaccatggcatcgagggatttgttactggtctctcctagttacacaaaaacaaaaaaaagaggaaatgttaatact |
13203303 |
T |
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| Q |
319 |
taattagttctaacttgataatattgcagcaaaaatgcaagcaaatttgagcaa |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13203304 |
taattagttctaacttgataatattgcagcaaaaatgcaagcaaatttgagcaa |
13203357 |
T |
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