View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11802_high_6 (Length: 273)

Name: NF11802_high_6
Description: NF11802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11802_high_6
NF11802_high_6
[»] chr6 (27 HSPs)
chr6 (1-252)||(5688749-5689006)
chr6 (1-252)||(5177931-5178177)
chr6 (1-252)||(5279756-5280008)
chr6 (2-112)||(5242504-5242614)
chr6 (1-136)||(5126597-5126732)
chr6 (3-112)||(5427094-5427203)
chr6 (1-214)||(5065338-5065552)
chr6 (6-110)||(5100812-5100916)
chr6 (6-110)||(5135913-5136017)
chr6 (1-107)||(5346221-5346327)
chr6 (6-104)||(5398243-5398341)
chr6 (7-108)||(23127306-23127407)
chr6 (1-121)||(5098403-5098523)
chr6 (1-105)||(5180773-5180877)
chr6 (7-110)||(5351598-5351701)
chr6 (1-110)||(5156007-5156116)
chr6 (1-110)||(5372289-5372398)
chr6 (1-105)||(5283223-5283327)
chr6 (1-112)||(5072674-5072785)
chr6 (1-112)||(5352855-5352966)
chr6 (11-105)||(5439213-5439307)
chr6 (1-110)||(2939107-2939216)
chr6 (3-103)||(5253727-5253827)
chr6 (1-79)||(5334377-5334455)
chr6 (7-108)||(5124439-5124540)
chr6 (1-105)||(5256113-5256217)
chr6 (7-105)||(5448807-5448905)
[»] chr4 (7 HSPs)
chr4 (1-133)||(4122615-4122747)
chr4 (5-183)||(25569036-25569217)
chr4 (1-145)||(4132577-4132718)
chr4 (1-110)||(4319296-4319405)
chr4 (66-112)||(7884147-7884193)
chr4 (67-112)||(4346621-4346666)
chr4 (67-112)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (1-104)||(47985393-47985496)
chr3 (1-104)||(48003967-48004070)
chr3 (1-104)||(47994680-47994783)
chr3 (1-104)||(48013252-48013355)
[»] chr7 (1 HSPs)
chr7 (1-112)||(36212913-36213024)
[»] scaffold0294 (1 HSPs)
scaffold0294 (7-103)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 5689006 - 5688749
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5689006 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtata 5688907  T
Q  101 tgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaatgctattaagagagg 197  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  5688906 tgatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaatgctattaagagagg 5688807  T
Q  198 tctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 252  Q
    ||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  5688806 tctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaaatga 5688749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 5177931 - 5178177
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5177931 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtata 5178030  T
Q  101 tgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat-taagagaggtc 199  Q
    ||||||||||||  | ||||| ||||||||||| |||||||||||||||      ||||||||||||||||||||||||||||||| | | ||||| |||    
T  5178031 tgatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgctttgtcagagaagtc 5178124  T
Q  200 tcttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaaatga 252  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5178125 tcttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaaatga 5178177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 5279756 - 5280008
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5279756 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtata 5279855  T
Q  101 tgatgaaccaatccgtgaaaatatggagcaa---tgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat-taagagag 196  Q
    ||||||||||||  | ||||| |||||||||   || |||||||||||||||      ||||||||||||||||||||||||||||||| | | |||||     
T  5279856 tgatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgctttgtcagagaa 5279949  T
Q  197 gtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 252  Q
    |||||||||||||||||||| ||| ||||||||||   |||||||||||||||||||||    
T  5279950 gtctcttctaatgcacaagaatacaatgtcattgttagtagtagtggtgatgaaaatga 5280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
Q  2 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 101  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| |||  ||||||||||||||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  102 gatgaaccaat 112  Q
    |||||||||||    
T  5242514 gatgaaccaat 5242504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 5126732 - 5126597
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||||||||||||||||||||| || |||||||||| ||| |||||  ||||||| | |||||||||||||||||||| ||| | ||||||||| ||||    
T  5126732 agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata 5126633  T
Q  101 tgatgaaccaatccgtgaaaatatggagcaatgtca 136  Q
    ||||||||||||  |||||| |||| ||||||||||    
T  5126632 tgatgaaccaattggtgaaactatgaagcaatgtca 5126597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
Q  3 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg 102  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| |||  |||||||||||||||||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  103 atgaaccaat 112  Q
    ||||||||||    
T  5427194 atgaaccaat 5427203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5065552 - 5065338
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||||||||||||||||| |||||| | || ||||||||  |||||  ||||||||| ||||||||| |||||||||  ||||||||||||||| ||||    
T  5065552 agagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatata 5065453  T
Q  101 tgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat-taagagaggtc 199  Q
    ||||||||||||   ||||||   |||| | ||||| | ||||||  | |||| ||||||  |||| ||||||||| ||||||||| | || | ||| ||    
T  5065452 tgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgctttctaggcgagatc 5065353  T
Q  200 tcttctaatgcacaa 214  Q
    |||||| ||||||||    
T  5065352 tcttctcatgcacaa 5065338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
Q  6 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 105  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  106 aacca 110  Q
    |||||    
T  5100816 aacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
Q  6 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 105  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  106 aacca 110  Q
    |||||    
T  5135917 aacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 5346221 - 5346327
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||   |||| |||| || ||||||||||||||||| ||| || |||||||| ||||    
T  5346221 agagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatata 5346320  T
Q  101 tgatgaa 107  Q
    |||||||    
T  5346321 tgatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 5398243 - 5398341
Alignment:
Q  6 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 104  Q
    ||||||||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| |||||||||||||| |||||||||    
T  5398243 gtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 23127407 - 23127306
Alignment:
Q  7 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 106  Q
    |||||||||||  ||||||| |||||||| |||||||||||   |||||||| || |||||| |||||||||| |||||||||||||| |||||||||||    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T
Q  107 ac 108  Q
    ||    
T  23127307 ac 23127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5098403 - 5098523
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||  ||  |||||| || ||| ||||||||||||| || ||| |||||||||| |||||    
T  5098403 agagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtata 5098502  T
Q  101 tgatgaaccaatccgtgaaaa 121  Q
    |||||||| |||  |||||||    
T  5098503 tgatgaacaaattggtgaaaa 5098523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 5180877 - 5180773
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||| ||||||||||| ||||||||  |||||||||||||||| |||| ||||||||| ||  |||||||||||||||| ||| || ||||||| |||||    
T  5180877 agagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtata 5180778  T
Q  101 tgatg 105  Q
    |||||    
T  5180777 tgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 5351598 - 5351701
Alignment:
Q  7 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 106  Q
    |||||||||||||||||||  ||||||||||||||||  ||| |||||| || || | || ||||||||| || |||  |||||||||||||||||||||    
T  5351598 tagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagtttatctcgtatatgatga 5351697  T
Q  107 acca 110  Q
    ||||    
T  5351698 acca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 5156116 - 5156007
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||| |||||||||||| |||||||| ||||||||||||||||   || |||||| || |    ||||||||||||||| |||||||||||||| |||||    
T  5156116 agagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagtttatcttgtata 5156017  T
Q  101 tgatgaacca 110  Q
     |||||||||    
T  5156016 cgatgaacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5372289 - 5372398
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||| |||||||||||| |||||||| |||||||||||||| |   || |||| | || || | ||||||||||||||| |||||| |||||||||||||    
T  5372289 agagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaatttatctcgtata 5372388  T
Q  101 tgatgaacca 110  Q
     |||||||||    
T  5372389 cgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 5283327 - 5283223
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||| ||| |||||||||| |||||  ||||||||||||||||  | | ||||||||| ||| |||||||||||||||| ||| || ||||||| |||||    
T  5283327 agagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtata 5283228  T
Q  101 tgatg 105  Q
    |||||    
T  5283227 tgatg 5283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5072785 - 5072674
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||| |||||||||||||||| ||| ||||| |||||||||||||   |||| |||| |||| |||||||||||| || |||| | |||||||| ||||    
T  5072785 agagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatata 5072686  T
Q  101 tgatgaaccaat 112  Q
     |||||| ||||    
T  5072685 cgatgaatcaat 5072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5352966 - 5352855
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||||||||||||||||| || ||| || ||||||| ||||| |||  |||||| || ||  ||||||| |||||||| |||||| ||||||| |||||    
T  5352966 agagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatttatctggtata 5352867  T
Q  101 tgatgaaccaat 112  Q
    |||| |||||||    
T  5352866 tgataaaccaat 5352855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
Q  11 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 105  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  | || | ||||||||  || || ||| ||| |||||||||||||||||    
T  5439213 atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg 5439307  T

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Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 2939107 - 2939216
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||| |||||||||||| || ||||| ||||||||||||||||   || |||| | || || | || ||||||||||||  ||||| |||||||||||||    
T  2939107 agagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaatttatctcgtata 2939206  T
Q  101 tgatgaacca 110  Q
    ||||||||||    
T  2939207 tgatgaacca 2939216  T

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Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 5253727 - 5253827
Alignment:
Q  3 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg 102  Q
    |||||| ||| |||||| |||||| | || ||||||||| |||||  ||||||||| ||| |||||||||||||||  || |||||||||||| ||||||    
T  5253727 agagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatg 5253826  T
Q  103 a 103  Q
    |    
T  5253827 a 5253827  T

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Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 5334377 - 5334455
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa 79  Q
    |||| ||||||||| || |||||||| |||||||||||||||| |||| |||||| || || | ||||||| |||||||    
T  5334377 agagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa 5334455  T

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Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 5124540 - 5124439
Alignment:
Q  7 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 106  Q
    ||||||| |||||||||||| |||| ||||||||  |||||| ||||||| | ||| | |||||||||||| | |||||| | ||| |  ||||||||||    
T  5124540 tagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgatga 5124441  T
Q  107 ac 108  Q
    ||    
T  5124440 ac 5124439  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 5256217 - 5256113
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||| ||| |||||||||| |||||  |||||||||||||||| || | ||||||  | || | ||||||||||||||| ||| || ||||| | |||||    
T  5256217 agagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtata 5256118  T
Q  101 tgatg 105  Q
    |||||    
T  5256117 tgatg 5256113  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 5448807 - 5448905
Alignment:
Q  7 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 105  Q
    |||||||||||||||||||  | |||||||||||| | |||| |||||| || || | ||||| |||| |||| |||  ||| ||||| ||||||||||    
T  5448807 tagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatctggtatatgatg 5448905  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 4122747 - 4122615
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||||| ||||||| ||| |||||| || ||||||||||| |||||  ||||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  101 tgatgaaccaatccgtgaaaatatggagcaatg 133  Q
    ||||||||||||| ||||||| || ||||||||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatg 4122615  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
Q  5 agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---caacggtttcattgtgaagaaaacaacagtttatctcgtatat 101  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||      | ||||||  |||||||| ||||||||||||||||||||     
T  25569036 agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac 25569135  T
Q  102 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 183  Q
    ||||||| |||  | ||||  ||||||||| |||||  |  ||||||||||| |||||| | || |||||||||| ||||||    
T  25569136 gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat 25569217  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4132718 - 4132577
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||||||||||||| ||| |||||| || ||||||| ||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  4132718 agagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatata 4132622  T
Q  101 tgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaaga 145  Q
    ||||||||||||  |||||||| ||| ||||||||| | ||||||    
T  4132621 tgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4319405 - 4319296
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||||| ||| ||| ||| |||||| || |||| |||||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  4319405 agagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatata 4319306  T
Q  101 tgatgaacca 110  Q
    ||||||||||    
T  4319305 tgatgaacca 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
Q  66 ttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 112  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||    
T  7884193 ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat 7884147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 4346621 - 4346666
Alignment:
Q  67 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 112  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4346621 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 4362810 - 4362855
Alignment:
Q  67 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 112  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4362810 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4362855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47985496 - 47985393
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  47985496 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47985397  T
Q  101 tgat 104  Q
    ||||    
T  47985396 tgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 48004070 - 48003967
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  48004070 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48003971  T
Q  101 tgat 104  Q
    ||||    
T  48003970 tgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47994783 - 47994680
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  47994783 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47994684  T
Q  101 tgat 104  Q
    ||||    
T  47994683 tgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 48013355 - 48013252
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  48013355 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48013256  T
Q  101 tgat 104  Q
    ||||    
T  48013255 tgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36213024 - 36212913
Alignment:
Q  1 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 100  Q
    ||||| |||||||||||||||||||| || | ||| |||||||||||  ||||||||| |||  ||||||||||||||| ||| |  |||||||| | ||    
T  36213024 agagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatctcattta 36212925  T
Q  101 tgatgaaccaat 112  Q
    ||||||||||||    
T  36212924 tgatgaaccaat 36212913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
Q  7 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga 103  Q
    ||||||||||| |||||||  | ||||||||||||||||||  ||||||||   |||||||||||| |||  |||||||| |||||||  |||||||    
T  7974 tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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