View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11802_high_8 (Length: 207)
Name: NF11802_high_8
Description: NF11802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11802_high_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8377325 - 8377554
Alignment:
| Q |
1 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcatccacc-ctttactgattctacactttga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |
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| T |
8377325 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcattcaccactttactgattctacactctga |
8377424 |
T |
|
| Q |
100 |
agaaaata----------------------gatagaaacatagtgagtcttgcatgagaaagaaatgagaacaaagatcaactctaaaactagcatttag |
177 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8377425 |
agaaaatagagagaaatttagagagagagggatagaaacatagtgagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttag |
8377524 |
T |
|
| Q |
178 |
aactatcaaaactgtagattcgatagagta |
207 |
Q |
| |
|
| |||||| || |||||||||||||||||| |
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|
| T |
8377525 |
acctatcacaagtgtagattcgatagagta |
8377554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 7094476 - 7094247
Alignment:
| Q |
1 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcatccacc-ctttactgattctacactttga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |
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|
| T |
7094476 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcattcaccactttactgattctacactctga |
7094377 |
T |
|
| Q |
100 |
agaaaata----------------------gatagaaacatagtgagtcttgcatgagaaagaaatgagaacaaagatcaactctaaaactagcatttag |
177 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7094376 |
agaaaatagagagaaatttagagagagagggatagaaacatagagagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttag |
7094277 |
T |
|
| Q |
178 |
aactatcaaaactgtagattcgatagagta |
207 |
Q |
| |
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| |||||| || |||||||||||||||||| |
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|
| T |
7094276 |
acctatcacaagtgtagattcgatagagta |
7094247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 7098209 - 7097980
Alignment:
| Q |
1 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcatccacc-ctttactgattctacactttga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |
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|
| T |
7098209 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcattcaccactttactgattctacactctga |
7098110 |
T |
|
| Q |
100 |
agaaaata----------------------gatagaaacatagtgagtcttgcatgagaaagaaatgagaacaaagatcaactctaaaactagcatttag |
177 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7098109 |
agaaaatagagagaaatttagagagagagggatagaaacatagagagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttag |
7098010 |
T |
|
| Q |
178 |
aactatcaaaactgtagattcgatagagta |
207 |
Q |
| |
|
| |||||| || |||||||||||||||||| |
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|
| T |
7098009 |
acctatcacaagtgtagattcgatagagta |
7097980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 33885938 - 33886052
Alignment:
| Q |
1 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcatccacc-ctttactgattctacactttga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |
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|
| T |
33885938 |
tttaggaagggagttagtgggagggttatttcacgattaataaaaatcggttaccttctttattccattcattcaccactttactgattctacactctga |
33886037 |
T |
|
| Q |
100 |
agaaaatagatagaa |
114 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
33886038 |
agaaaatagagagaa |
33886052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 33958314 - 33958200
Alignment:
| Q |
1 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcatccacc-ctttactgattctacactttga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |
|
|
| T |
33958314 |
tttaggaagggagttagtgggagggttatttcacgattaataaaaatcggttaccttctttattccattcattcaccactttactgattctacactctga |
33958215 |
T |
|
| Q |
100 |
agaaaatagatagaa |
114 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
33958214 |
agaaaatagagagaa |
33958200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22362552 - 22362628
Alignment:
| Q |
1 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcatccacc |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22362552 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcattcacc |
22362628 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 33886074 - 33886151
Alignment:
| Q |
108 |
gatagaaacatagtgagtcttgcatgagaaagaaatgagaacaaagatcaactctaaaactagcatttagaactatca |
185 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
33886074 |
gatagaaacatagagagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagatctatca |
33886151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 33958178 - 33958101
Alignment:
| Q |
108 |
gatagaaacatagtgagtcttgcatgagaaagaaatgagaacaaagatcaactctaaaactagcatttagaactatca |
185 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33958178 |
gatagaaacatagagagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagatctatca |
33958101 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 14097502 - 14097600
Alignment:
| Q |
6 |
gaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattc----cattcatccacc-ctttactgattctacactttga |
99 |
Q |
| |
|
|||||||||||| || ||| |||| |||| ||||||||||||||||||||| ||||||| ||||||| |||| || ||||||||||||||||||| |
|
|
| T |
14097502 |
gaagggagttagaggaaggtttatctcactattaataacaatcggttacctcatttattctattcattcattcaccactctactgattctacactttga |
14097600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 41314578 - 41314525
Alignment:
| Q |
3 |
taggaagggagttagtgggagggttatttcacaattaataacaatcggttacct |
56 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| | ||||||||||| ||||||| |
|
|
| T |
41314578 |
taggaagagagttagtgggagagttatttcactaataataacaatcagttacct |
41314525 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 11993161 - 11993047
Alignment:
| Q |
1 |
tttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcatccacc-ctttactgattctacactttga |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| |||| |||| ||||| |||| |||||||| ||||||||||| | |
|
|
| T |
11993161 |
tttaggaagggagttagtgggagg-ttatttcattattaataacaatcagttacctcctttgttcctttcattcaccactttactggttctacactttaa |
11993063 |
T |
|
| Q |
100 |
agaaaatagatagaaa |
115 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
11993062 |
agaaaatagagagaaa |
11993047 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 14276942 - 14276864
Alignment:
| Q |
36 |
attaataacaatcggttaccttctttattccattcatccacc-ctttactgattctacactttgaagaaaatagatagaaac |
116 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
14276942 |
attaatagcaatcggttacctcctttattccattcattcaccactttactga---tacactttgaagaaaatggagagaaac |
14276864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 37627713 - 37627660
Alignment:
| Q |
3 |
taggaagggagttagtgggagggttatttcacaattaataacaatcggttacct |
56 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| | ||||||||||| ||||||| |
|
|
| T |
37627713 |
taggaagagagttagtgggagagttatttcactaataataacaatcagttacct |
37627660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 37806836 - 37806783
Alignment:
| Q |
3 |
taggaagggagttagtgggagggttatttcacaattaataacaatcggttacct |
56 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| | ||||||||||| ||||||| |
|
|
| T |
37806836 |
taggaagagagttagtgggagagttatttcactaataataacaatcagttacct |
37806783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 2186902 - 2187003
Alignment:
| Q |
3 |
taggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttattccattcatccacc-ctttactgattctacactttgaag |
101 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| | ||||||||||| ||||||| | | ||| ||| | |||| |||| ||||||||||||||||||| |
|
|
| T |
2186902 |
taggaagagagttagtgggagagttatttcactaataataacaatcagttacctcttctcttctatttagtcaccactttgctgattctacactttgaag |
2187001 |
T |
|
| Q |
102 |
aa |
103 |
Q |
| |
|
|| |
|
|
| T |
2187002 |
aa |
2187003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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