View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11802_low_1 (Length: 651)
Name: NF11802_low_1
Description: NF11802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11802_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 342 - 640
Target Start/End: Complemental strand, 3272028 - 3271730
Alignment:
| Q |
342 |
acaagatatgtaattcaccttgcagtattgttttggagatagcacattctgtggtcctccatcatattagattctttgtctcacagctcagcatagcgtt |
441 |
Q |
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| T |
3272028 |
acaagatatgtaattcaccttgcaatattgttttggagatagcacattctgtggtcctccatcatattagattctttgtctcacagctcagcatagcgtt |
3271929 |
T |
|
| Q |
442 |
ttgtgtttgtttttaacatttgttccatgcattcaccgtttgtccaaatgttagaacatctgcttaaattcaatgtcttaaacaattgtctctatgtgat |
541 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3271928 |
ttgtgtttgtttttaacatttgttccatgtattcaccgtttgtccaaatgttagaacatctgcttaaattcaatgtcttaaacaattgtctctatgtgat |
3271829 |
T |
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| Q |
542 |
ggaagagtatatattgatcattcacagaggtccagattggatttcaataccattacaaattgaatatgataccataaatgatagtaataaactattcat |
640 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
3271828 |
ggaagagtatatattgatcattcacagagctccagattggatttcaataccattacaaattgaataggataccataaatgatagtaatgaactattcat |
3271730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 3272419 - 3272113
Alignment:
| Q |
18 |
aaaacagaatgtaaaactcccttcaaagaaaatgctttcttttgaacaatctatctaaccacattgcttgtgaaattgctgttatatgatgtaaaaaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3272419 |
aaaacagaatgtaaaactcccttcaaagaaaatggtttcttttgaacaatctatctaaccacattgcttgtgaaattgctgttatatgatgtaaaaaaca |
3272320 |
T |
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| Q |
118 |
tgaaaccacactgtttgtcnnnnnnnnnnnt----ttgtgttaaccctccggtttttagggaaagaggccctagcaatccggttcggttagaaggtaaat |
213 |
Q |
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| T |
3272319 |
tgaaaccacactgtttgtcaaaaaaaaaaaaaaaattgtgttaaccctccggtttttaggggaagaggccctagcaatccggttcggttagaaggtaaat |
3272220 |
T |
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| Q |
214 |
aaagtctgaccaataattatttttactagaaatcgaacttagtttttcctgaacgattaattctagagagctcattaaccatttgagcaaaatcacttga |
313 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3272219 |
aaagtctgaccaataattatttctactaggaatcgaacttagtttttcctgaacgattaattctagagagctcattaaccatttgaacaaaatcacttga |
3272120 |
T |
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| Q |
314 |
ttaatgg |
320 |
Q |
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| T |
3272119 |
ttaatgg |
3272113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 46476972 - 46476900
Alignment:
| Q |
243 |
aaatcgaacttagtttttcctgaacgattaattctaga-gagctcattaaccatttgagcaaaatcacttgatt |
315 |
Q |
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||||||||||| |||| |||||||||||| ||||||| |||||||||||||| |||||| |||||||||||| |
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| T |
46476972 |
aaatcgaactttgtttctcctgaacgattcgttctagaggagctcattaacca-ttgagctcaatcacttgatt |
46476900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 577465 - 577417
Alignment:
| Q |
204 |
gaaggtaaataaagtctgaccaataattatttttactagaaatcgaact |
252 |
Q |
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|||||||| |||| ||||||||||||||||||| |||| ||||||||| |
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| T |
577465 |
gaaggtaagtaaaatctgaccaataattattttcactacgaatcgaact |
577417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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