View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11802_low_3 (Length: 427)
Name: NF11802_low_3
Description: NF11802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11802_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Complemental strand, 38002685 - 38002287
Alignment:
| Q |
13 |
agatgaaccatattattggaggattcaaaacgacctctatcaaaaatagttttagctnnnnnnntaagattatttttgtccttatatatatgccaaacca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38002685 |
agatgaaccatattattggaggattcaaaacgacctctatcaaaaatagttttagctaaaaaaataagattatttttgtccttatatatatgccaaacca |
38002586 |
T |
|
| Q |
113 |
taacaatctagttagaggtagaaacaccaacgccatttgaggagagattcaaatgtaaccaatcattaagacctggcctagagaatttactcaaatccct |
212 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38002585 |
taaaaatctagttagaggtagaaacaccaacgccatttgaggagagattcaaatgtaaccaatcattaagacctggcctagagaatttactcaaatccct |
38002486 |
T |
|
| Q |
213 |
ttaataagatgatccaaaagttctcaaacgtagtcacaatctctaagtaaatgcataattgtttcctcctaagcaccacatcaaactcaagtaacatcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38002485 |
ttaataagatgatccaaaagttctcaaacgtagtcacaatctctaagtaaatgcataattgtttcctcctaagcaccacatcaaactcaagtaacatcat |
38002386 |
T |
|
| Q |
313 |
cagtcatgagacggattctgcgctcaatgttagtaaagagccgaccatgacaaagttttcaaagatatgcctgaatccgtcaatgacttaggcagattc |
411 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
38002385 |
cagtcatgtgacggattctgcgctcaatattagtaaagagccgaccatgacaaagttttcaatgatatgcctgaatcggtcaatgacttaggcagattc |
38002287 |
T |
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