View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11803_low_1 (Length: 760)
Name: NF11803_low_1
Description: NF11803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11803_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 22405458 - 22405007
Alignment:
| Q |
1 |
tccttttactttgtgtctttgcttactgccacat------gataatgctcaatcattcttataaattgtttttaatgttgtttt-caaataggtgttgtg |
93 |
Q |
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|||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22405458 |
tccttttactttgtatctttgctcactgccacatatagatgataatgctcaatcattcttataaattgtttttaatgttgtttttcaaataggtgttgtg |
22405359 |
T |
|
| Q |
94 |
attacataaaaaa-cacttacatggaaataggttttgagagcaatcaaatgaaaatgagtctgtagatggaagtattgcgtaatttataataataataat |
192 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22405358 |
attacataaaaaaacacttacatggaaataggttttgagagcaatcaaatgaaaatgagtctttagatggaagtattgcgtaatttataataataataat |
22405259 |
T |
|
| Q |
193 |
gttgtttgtaactcattcctaaacaatataaatgtttagtatatcttatggtaattcaatttccttagacttactttcccccgataacatttataataaa |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
22405258 |
gttgtttgtaactcattcctaaacaatataaatgtttagtatatcttatggtaatacaatttcctaagacttac-ttcccccgataacatttataataaa |
22405160 |
T |
|
| Q |
293 |
aata---atattttagattcattcaataattaattaatgtatctgacctttttataaaccaattactttagttattcaacgaacctcaaaaattgtcttt |
389 |
Q |
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|| | ||||||||||||||||||| |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
22405159 |
aaaatatatattttagattcattcaa----taattaatgtatctgatatttttataaatcagttactttagttattcaacgaacctcaaaaattgtcttt |
22405064 |
T |
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| Q |
390 |
ggttataaatgtaaccagaaatagtatttaaactcaatgaaaatatataatactata |
446 |
Q |
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| T |
22405063 |
ggttataaatgtaaccagaaagagtatttaaactcaatgaaaatatataatactata |
22405007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 55121245 - 55121183
Alignment:
| Q |
340 |
tttataaaccaattactttagttattcaacgaacctcaaaaattg-tctttggttataaatgt |
401 |
Q |
| |
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|||||||||||| ||| |||||||||||| |||||| |||||||| | |||| |||||||||| |
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| T |
55121245 |
tttataaaccaaatacattagttattcaatgaacctaaaaaattgttttttgtttataaatgt |
55121183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 340 - 447
Target Start/End: Original strand, 53722 - 53829
Alignment:
| Q |
340 |
tttataaaccaattactttagttattcaacgaacctcaaaaattgtctttggttataaatgtaaccagaaatagtatttaaactcaatgaaaatatataa |
439 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | |
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| T |
53722 |
tttataaaccagttactttagttattcaacgaacctcaaaagttgtctttggttataaatgtaacgagaaagagtatttatactcaatgaaaatatatta |
53821 |
T |
|
| Q |
440 |
tactataa |
447 |
Q |
| |
|
|||||||| |
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| T |
53822 |
tactataa |
53829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 340 - 447
Target Start/End: Complemental strand, 40919373 - 40919266
Alignment:
| Q |
340 |
tttataaaccaattactttagttattcaacgaacctcaaaaattgtctttggttataaatgtaaccagaaatagtatttaaactcaatgaaaatatataa |
439 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | |
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| T |
40919373 |
tttataaaccagttactttagttattcaacgaacctcaaaagttgtctttggttataaatgtaacgagaaagagtatttatactcaatgaaaatatatta |
40919274 |
T |
|
| Q |
440 |
tactataa |
447 |
Q |
| |
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|||||||| |
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|
| T |
40919273 |
tactataa |
40919266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 410
Target Start/End: Original strand, 30429117 - 30429207
Alignment:
| Q |
320 |
taattaatgtatctgacctttttataaaccaattactttagttattcaacgaacctcaaaaattgtctttggttataaatgtaaccagaaa |
410 |
Q |
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||||||||||||||||||||| |||| || | ||| |||||||||||| ||||| || |||| | |||| |||||||||| |||||||| |
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| T |
30429117 |
taattaatgtatctgacctttatatagactagatacattagttattcaataaacctaaacaattttttttgcttataaatgtgaccagaaa |
30429207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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