View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11803_low_2 (Length: 607)

Name: NF11803_low_2
Description: NF11803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11803_low_2
NF11803_low_2
[»] chr2 (8 HSPs)
chr2 (16-514)||(15870309-15870807)
chr2 (541-589)||(15870805-15870853)
chr2 (379-471)||(18835833-18835925)
chr2 (75-183)||(45196540-45196648)
chr2 (281-368)||(18835986-18836073)
chr2 (301-354)||(17511485-17511538)
chr2 (292-344)||(2010434-2010486)
chr2 (113-205)||(21979637-21979729)
[»] chr4 (4 HSPs)
chr4 (74-262)||(53074260-53074448)
chr4 (105-160)||(48435839-48435894)
chr4 (383-471)||(27128860-27128948)
chr4 (292-324)||(52906437-52906469)
[»] chr1 (2 HSPs)
chr1 (373-478)||(26128638-26128743)
chr1 (74-123)||(1495853-1495902)
[»] chr3 (5 HSPs)
chr3 (377-448)||(4194815-4194886)
chr3 (393-457)||(3009406-3009470)
chr3 (306-353)||(24882240-24882287)
chr3 (301-370)||(47364811-47364880)
chr3 (292-324)||(13806160-13806192)
[»] chr7 (3 HSPs)
chr7 (399-457)||(28787612-28787670)
chr7 (282-324)||(29906649-29906691)
chr7 (377-457)||(41355717-41355796)
[»] chr6 (1 HSPs)
chr6 (383-471)||(2465661-2465749)


Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Original strand, 15870309 - 15870807
Alignment:
Q  16 catcagtataactgcgtatatgccaattggacttgttttgaggttttgtttttcttttcagattgctacattaatagcagtatatgccaactggggattt 115  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870309 catcggtataactgcgtatatgcgaattggacttgttttgaggttttgtttttcttttcagattgctacattaatagcagtatatgccaactggggattt 15870408  T
Q  116 gcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatcattttctatattcctcttgacattatcaagtttgcaattcgct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870409 gcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatcattttctatattcctcttgacattatcaagtttgcaattcgct 15870508  T
Q  216 atggcttgagcggcaaagcttggacaaatcttcttgaaaacaaggtaattcccaaatttctagcagtttacttttcatgttttcggttttcattttcact 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870509 atggcttgagcggcaaagcttggacaaatcttcttgaaaacaaggtaattcccaaatttctagcagtttacttttcatgttttcggttttcattttcact 15870608  T
Q  316 tcaactaattgacataaactaatatagatcgaatattttcatcacaattttcttttgcattttttcgttgtttctgaaaatgtattcttcatatcttgac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870609 tcaactaattgacataaactaatatagatcgaatattttcatcacaattttcttttgcattttttcgttgtttctgaaaatgtattcttcatatcttgac 15870708  T
Q  416 ttccatcttttctctatcacaattgttaactacacaagtcttttatcaccttgttaacgatttttatacatatgctcgatgttgatgaggttttctatg 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870709 ttccatcttttctctatcacaattgttaactacacaagtcttttatcaccttgttaacgatttttatacatatgctcgatgttgatgaggttttctatg 15870807  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 541 - 589
Target Start/End: Original strand, 15870805 - 15870853
Alignment:
Q  541 atgtgtgttttagactgccttcaccaataaaaaggactatggaaaagag 589  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  15870805 atgtgtgttttagactgcctttaccaataaaaaggactacggaaaagag 15870853  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 471
Target Start/End: Complemental strand, 18835925 - 18835833
Alignment:
Q  379 ttcgttgtttctgaaaatgtattcttcatatcttgacttccatcttttctctatcacaattgttaactacacaagtcttttatcaccttgtta 471  Q
    ||||||||||||||||||| ||||||| || |||  ||||||  |  |||||||||||||||||  |||||| |||||| || | ||||||||    
T  18835925 ttcgttgtttctgaaaatgcattcttcctaacttaccttccacttaatctctatcacaattgttcgctacacgagtcttctacctccttgtta 18835833  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 45196648 - 45196540
Alignment:
Q  75 agattgctacattaatagcagtatatgccaactggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatcat 174  Q
    ||||||| ||| | ||||| || ||||| || ||||  |||||||| ||  |||||||||| ||||| |||||||| ||||| ||||| ||||| || ||    
T  45196648 agattgccacactgatagctgtgtatgcaaattgggagtttgcaagtatgaaaggaattggatggggttgggcaggtgtcatttggctctacagcattat 45196549  T
Q  175 tttctatat 183  Q
    |||||||||    
T  45196548 tttctatat 45196540  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 368
Target Start/End: Complemental strand, 18836073 - 18835986
Alignment:
Q  281 gtttacttttcatgttttcggttttcattttcacttcaactaattgacataaactaatatagatcgaatattttcatcacaattttct 368  Q
    |||||||||||||| || | ||||| ||||||||||||||||||  | ||||| ||||||||| | | |||| ||||||  |||||||    
T  18836073 gtttacttttcatgattcctgtttttattttcacttcaactaataaatataaaataatatagacccactattctcatcatcattttct 18835986  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 17511485 - 17511538
Alignment:
Q  301 gttttcattttcacttcaactaattgacataaactaatatagatcgaatatttt 354  Q
    ||||||||||||||||||||| ||  ||||||| ||||||||||| || |||||    
T  17511485 gttttcattttcacttcaactgataaacataaaataatatagatccaacatttt 17511538  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 2010486 - 2010434
Alignment:
Q  292 atgttttcggttttcattttcacttcaactaattgacataaactaatatagat 344  Q
    |||||||| |||||||||||| |||||||||||  ||||||  ||||||||||    
T  2010486 atgttttctgttttcattttctcttcaactaataaacataatataatatagat 2010434  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 21979729 - 21979637
Alignment:
Q  113 tttgcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatcattttctatattcctcttgacattatcaagttt 205  Q
    ||||| |||||| | |||||||| ||| ||||||| ||||| |||||| | ||||| || |||   || ||||||||||||||| ||||||||    
T  21979729 tttgctagaatcaatggaattgggtggagatgggctggagttatctggatctacagcattattacatacattcctcttgacattctcaagttt 21979637  T

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Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 74 - 262
Target Start/End: Complemental strand, 53074448 - 53074260
Alignment:
Q  74 cagattgctacattaatagcagtatatgccaactggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatca 173  Q
    |||||||||||  |||||||||||||||||||||||||||| ||||   | ||||||||||||||||| ||||||||||| |||||||| ||||| ||      
T  53074448 cagattgctaccataatagcagtatatgccaactggggattcgcaaaggtacaaggaattggttggggttgggcaggagtaatctggctctacagcattg 53074349  T
Q  174 ttttctatattcctcttgacattatcaagtttgcaattcgctatggcttgagcggcaaagcttggacaaatcttcttgaaaacaaggta 262  Q
    | ||||||||||| || ||| | || |||||||| || |||||    ||||| ||||| |||||||  ||||| || || |||||||||    
T  53074348 tcttctatattccactcgacgtgatgaagtttgccatccgctacatattgagtggcaaggcttggaacaatctcctagacaacaaggta 53074260  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 48435894 - 48435839
Alignment:
Q  105 actggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctgg 160  Q
    ||||||||||||| |||||| | |||||||||||| ||||||| ||||| ||||||    
T  48435894 actggggatttgctagaatcaatggaattggttggagatgggctggagtaatctgg 48435839  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 471
Target Start/End: Complemental strand, 27128948 - 27128860
Alignment:
Q  383 ttgtttctgaaaatgtattcttcatatcttgacttccatcttttctctatcacaattgttaactacacaagtcttttatcaccttgtta 471  Q
    ||||||||||||| | ||||| | || |||| ||||||| || | ||||||||||||||| ||||||  |||| || ||| ||||||||    
T  27128948 ttgtttctgaaaacgcattctccgtagcttgtcttccattttgtatctatcacaattgtttactacattagtcgttcatctccttgtta 27128860  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 52906469 - 52906437
Alignment:
Q  292 atgttttcggttttcattttcacttcaactaat 324  Q
    |||||||| ||||||||||||||||||||||||    
T  52906469 atgttttctgttttcattttcacttcaactaat 52906437  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 478
Target Start/End: Original strand, 26128638 - 26128743
Alignment:
Q  373 cattttttcgttgtttctgaaaatgtattcttcatatcttgacttccatcttttctctatcacaattgttaactacacaagtcttttatcaccttgttaa 472  Q
    |||| |||| |||||||| |||||| ||||||  || |||  |||||| |||||||||||||||||||||  |||||||||||||| |||  ||||||||    
T  26128638 cattgtttcattgtttctaaaaatgcattctttctagctttccttccaccttttctctatcacaattgttccctacacaagtctttcatctacttgttaa 26128737  T
Q  473 cgattt 478  Q
    | ||||    
T  26128738 caattt 26128743  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 1495902 - 1495853
Alignment:
Q  74 cagattgctacattaatagcagtatatgccaactggggatttgcaagaat 123  Q
    |||||||| ||||| |||||||| ||||| || |||||||||||||||||    
T  1495902 cagattgcaacatttatagcagtgtatgctaattggggatttgcaagaat 1495853  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 448
Target Start/End: Complemental strand, 4194886 - 4194815
Alignment:
Q  377 ttttcgttgtttctgaaaatgtattcttcatatcttgacttccatcttttctctatcacaattgttaactac 448  Q
    ||||||||||||||||||||| | ||||| ||| ||  |||| ||||| ||||||||||||||||| |||||    
T  4194886 ttttcgttgtttctgaaaatgcaatcttcctattttaccttctatcttctctctatcacaattgttcactac 4194815  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 457
Target Start/End: Complemental strand, 3009470 - 3009406
Alignment:
Q  393 aaatgtattcttcatatcttgacttccatcttttctctatcacaattgttaactacacaagtctt 457  Q
    ||||| ||||||| ||||||| ||| |||||||| ||||||||||||||| ||| ||| ||||||    
T  3009470 aaatgcattcttcctatcttgcctttcatcttttgtctatcacaattgttcactgcactagtctt 3009406  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 24882287 - 24882240
Alignment:
Q  306 cattttcacttcaactaattgacataaactaatatagatcgaatattt 353  Q
    |||||||||||||||||||  ||||||| ||||||||||| |||||||    
T  24882287 cattttcacttcaactaataaacataaaataatatagatctaatattt 24882240  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 47364880 - 47364811
Alignment:
Q  301 gttttcattttcacttcaactaattgacataaactaatatagatcgaatattttcatcacaattttcttt 370  Q
    ||||||||||||||||||||||||  |||||||  || ||| ||  ||||||||| |||| |||||||||    
T  47364880 gttttcattttcacttcaactaataaacataaaagaaaataaatttaatattttcctcaccattttcttt 47364811  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 13806192 - 13806160
Alignment:
Q  292 atgttttcggttttcattttcacttcaactaat 324  Q
    |||||||| ||||||||||||||||||||||||    
T  13806192 atgttttctgttttcattttcacttcaactaat 13806160  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 28787670 - 28787612
Alignment:
Q  399 attcttcatatcttgacttccatcttttctctatcacaattgttaactacacaagtctt 457  Q
    ||||||||||| ||  |||||||||| ||||||||||||||||| |||||| |||||||    
T  28787670 attcttcatatattcccttccatcttctctctatcacaattgttcactacataagtctt 28787612  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 29906691 - 29906649
Alignment:
Q  282 tttacttttcatgttttcggttttcattttcacttcaactaat 324  Q
    ||||||| |||||||| | ||||||||||||||||||||||||    
T  29906691 tttacttctcatgtttactgttttcattttcacttcaactaat 29906649  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 41355717 - 41355796
Alignment:
Q  377 ttttcgttgtttctgaaaatgtattcttcatatcttgacttccatcttttctctatcacaattgttaactacacaagtctt 457  Q
    ||||| ||||||||||||||| ||||||  || |||| | |||||||| | ||| |||||| |||| ||||||||||||||    
T  41355717 ttttcattgtttctgaaaatgcattctttctagcttgtcatccatcttctgtct-tcacaaatgttcactacacaagtctt 41355796  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 471
Target Start/End: Complemental strand, 2465749 - 2465661
Alignment:
Q  383 ttgtttctgaaaatgtattcttcatatcttgacttccatcttttctctatcacaattgttaactacacaagtcttttatcaccttgtta 471  Q
    ||||||||||||| | ||||| | || |||| ||||||| || | ||||||||||||||| ||||||  |||| || ||| ||||||||    
T  2465749 ttgtttctgaaaacgcattctccgtagcttgtcttccattttgtatctatcacaattgtttactacattagtcgttcatctccttgtta 2465661  T

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