View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_high_12 (Length: 330)
Name: NF11804_high_12
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_high_12 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 7425913 - 7426215
Alignment:
| Q |
9 |
agcagagacatctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtattgcaacagtataattcattaattgagaaaatatttttt |
108 |
Q |
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| T |
7425913 |
agcagggacatctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtattgcaacagtataattcattaattgagaaaatatttttt |
7426012 |
T |
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| Q |
109 |
ctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttgttttcaaaattatgcgttaaattttcaacaattgcaa |
208 |
Q |
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| T |
7426013 |
ctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttgttttcaaaattatgcgttaaatttttaacaattgcaa |
7426112 |
T |
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| Q |
209 |
tcttggcaaaccatggggaaaagctttagcttcaagagtggaaatataggtagcaatgtgcattgatctgagaatcgggtgctctttagttgcgtgttat |
308 |
Q |
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| T |
7426113 |
tcttggcaaaccatggggaaaagctttagcttcaagagtggaaatattggtagcaatgtgcattgatctgagaatcgggtgctctttagttgcgtgttat |
7426212 |
T |
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| Q |
309 |
cga |
311 |
Q |
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||| |
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| T |
7426213 |
cga |
7426215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 17793 - 17587
Alignment:
| Q |
17 |
catctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtattgcaacagtataattcattaattgagaaaatattttttctttctca |
116 |
Q |
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| T |
17793 |
catctcagtttgattgcatatatagcaaggtgctggcagcaacattggtggtatcctaacagtagaattccttaattgagaaaagattt---ctttgtca |
17697 |
T |
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| Q |
117 |
gggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttgttttcaaaattatgcgttaaattttcaacaattgcaatcttggca |
216 |
Q |
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| T |
17696 |
gggcaggttgagttgttcagctattctcttaaatggcagcagcatctttatgttgttttcatcattatgtgttaaattttcgactattgcaatctcggga |
17597 |
T |
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| Q |
217 |
aaccatgggg |
226 |
Q |
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| T |
17596 |
aactatgggg |
17587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 25812177 - 25812227
Alignment:
| Q |
230 |
agctttagcttcaagagtggaaatataggtagcaatgtgcattgatctgag |
280 |
Q |
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| T |
25812177 |
agctttagcttcaagagtgcaaatattggcagcaaggtgcattgatttgag |
25812227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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