View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11804_high_23 (Length: 227)
Name: NF11804_high_23
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 6889457 - 6889261
Alignment:
| Q |
13 |
gtgagatgaaaataagcaagttggaaaatgttgaatatcacagctgagattgatacttaattcctggacgtgatgtgaaacagcatatttgatcatccgt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6889457 |
gtgacatgaaaataagcaagttggaaaatgttgaatatcagagctgagattgatacttaattcctggacgtgatgtgaaacagcatatttgatcatccgt |
6889358 |
T |
|
| Q |
113 |
tggagtagacggggatacatagtaccatggcgctgaaaatggagagcgcgcagtggggttgacacattacgaagagacaaaatgcgagacacaaatt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6889357 |
tggagtagacggggatacatagtaccatggcgctgaaaatggagagcgcgcagtggggttgacgcattacgaagagacaaaatgcgagacacaaatt |
6889261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 6844457 - 6844266
Alignment:
| Q |
18 |
atgaaaataagcaagttggaaaatgttgaatatcacagctgagattgatacttaattcctggacgtgatgtgaaacagcatatttgatcatccgttggag |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | || ||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
6844457 |
atgaaaagaagcaagttggaaaatgttgaatatcagatatgggattgatacttaattgctggacattgtgtgaaacagcatatttgaccatccgttggag |
6844358 |
T |
|
| Q |
118 |
tagacggggatacatagtaccatggcgctgaaaatggagagcgcgcagtggggttgacacattacgaagagacaaaatgcgagacacaaatt |
209 |
Q |
| |
|
|| |||| | | || |||||||| ||||| |||||||||| |||||||| | || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
6844357 |
taaacggtgctgcacagtaccatcgcgctcaaaatggagaatgcgcagtgagctttttgcattacgaagagacaaaatacgagacacaaatt |
6844266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 6848895 - 6848709
Alignment:
| Q |
20 |
gaaaataagcaagttggaaaatgttgaatatcacagctgagattgatacttaattcctggacgtgatgtgaaacagcatatttgatcatccgttggagta |
119 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||||||||| | |||| ||||| || | ||| |||||||||| ||||||||||| ||| |||| |||| |
|
|
| T |
6848895 |
gaaaagaagcaagttgaaaaatcttgaatatcacagctgatactgatccttaactcttcgacatgatgtgaaaaagcatatttgaagatctgttgcagta |
6848796 |
T |
|
| Q |
120 |
gacggggatacatagtaccatggcgctgaaaatggagagcgcgcagtggggttgacacattacgaagagacaaaatgcgagacacaa |
206 |
Q |
| |
|
||| || | || | |||||| ||||| ||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6848795 |
gacaggtctccacaataccatcgcgctcaaaatcgagatagcgcagtggggttgatgcattacgaagagacaaaatacgagacacaa |
6848709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 30598121 - 30598172
Alignment:
| Q |
157 |
agcgcgcagtggggttgacacattacgaagagacaaaatgcgagacacaaat |
208 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
30598121 |
agcgtgcagcggggttgacacatcacgaagacacaaaatacgagacacaaat |
30598172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 13459937 - 13459901
Alignment:
| Q |
18 |
atgaaaataagcaagttggaaaatgttgaatatcaca |
54 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
13459937 |
atgaaaacaagcaagatggaaaatgttgaatatcaca |
13459901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University