View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_high_24 (Length: 220)
Name: NF11804_high_24
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 33782264 - 33782345
Alignment:
| Q |
123 |
atccaaaatcgacctatttgaaagtgttactcgatgccttttataaattttcgaatctcaatgattcaaaaacgggcctatg |
204 |
Q |
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| T |
33782264 |
atccaaaatcgacccctttggaagtgttacttgatgccttttataaattttcgaatctcagtgattcaaaaacgggcctatg |
33782345 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 33782189 - 33782263
Alignment:
| Q |
19 |
aatacacgaataagtgatgatccgaaagatgaagtcttgttacaggcgtatccaatatgcttcagccttcaagaa |
93 |
Q |
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| T |
33782189 |
aatacaggaataagtgatgatccaaaagatgaagtcttgttcccggtatattcaatatgctccaaccttcaagaa |
33782263 |
T |
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