View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_high_3 (Length: 472)
Name: NF11804_high_3
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 109 - 454
Target Start/End: Original strand, 41873716 - 41874062
Alignment:
| Q |
109 |
gatagaatcactaactcaagttatttaataag-attcagatgaaatttcatttaaaaataaaataatactattttgttcttacttccaggtataggttaa |
207 |
Q |
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| T |
41873716 |
gatagaatcactaactcaagttatttaataaggattcgcatgaaatttcatttaaaaataaaataatactattttgttcttacttccaggtataggttaa |
41873815 |
T |
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| Q |
208 |
atacttaattgggcaatcaaaagattcttttctacaaagttgatctaaattcttctccttgagtcagcaaatttaaattactttcctttcatgtcttttt |
307 |
Q |
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| T |
41873816 |
atacttaattgggcaatcaaaagattcttttctacaaagttgatctaaattcttctccttgagtcagcaaatttaaattactttcctttcatgtcttttt |
41873915 |
T |
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| Q |
308 |
cacattgagagtctatagctttttgcattattttcctttcatatttagacaagttagtattgaaaagtaacttgtaatgggcaaataaattattgtgccc |
407 |
Q |
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| T |
41873916 |
cacattgagagtctatagctttttgcattattttcctttcatatttagacaagttagcattgaaaagtaacttgtaatgggcaaataaattattgtgccc |
41874015 |
T |
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| Q |
408 |
gattcagagaattgaacctatgtcaacttctatataaatgcattttg |
454 |
Q |
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| T |
41874016 |
gattcagagaattgaacctatgtcaacttctatataaatgcattttg |
41874062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41873358 - 41873458
Alignment:
| Q |
1 |
gagtcaaattcacttatttgatgttcttcggtcccataatataaattatttagcaagtaaattgttttttgacatgtagtatatcgttttgtagtatcaa |
100 |
Q |
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| T |
41873358 |
gagtcaaattcacttatttgatgttcttcggtcccataatataaatgatttagcaagtaaattgttttttgacatgtagtatgtcgttttgtagtatcaa |
41873457 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
41873458 |
t |
41873458 |
T |
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