View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11804_high_5 (Length: 408)
Name: NF11804_high_5
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 37769527 - 37769132
Alignment:
| Q |
1 |
aggaaaatttgacatgaacagatgtttcaggtttcttccaatctcagctacctcccaattgggaagaatagataacaacacacgaaacttgtgcccttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37769527 |
aggaaaatttgacatgaacagatgtttcaggtttcttccaatatcagctacctcccaattgggaagaatagataacaacacacgaaacttgtgcccttcc |
37769428 |
T |
|
| Q |
101 |
acttgtgctaaagaaatttttattcttaggagcaccccttttaactatctttatgatttggttgcgatcgcaattgcagct-----gcgaataaaaggtt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
37769427 |
acttgtgctaaagaaatttttattcttaggagcaccccttttaactatctttatgatttggttgtgatcgcaattgcagctacgctgcgaataaaaggtt |
37769328 |
T |
|
| Q |
196 |
aggtgagttgggtcccagggttcaccatagccaagcctcatggctcaaagctgcgagggtgtgacctcacaccagcagcaagagttgaactcacatcttt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37769327 |
aggtgagttgggtcccagggttcaccatagccaagcctcatggctcaaagctgcgagggtgtgacctcacaccagcagcgagagttgaactcacatcttt |
37769228 |
T |
|
| Q |
296 |
gcgagatttaccaaccctttttagctggcgagaacatgcgttacaaagacaaaaacaacagaaaaacattgatgtcaaaacaatgacattaacttt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37769227 |
gcgagatttaccaaccctttttagctggtgagaacatgtgttgcaaagacaaaaacaacagaaaaacattgatgtcaaaacaatgacattaacttt |
37769132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University