View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_low_10 (Length: 361)
Name: NF11804_low_10
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_low_10 |
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| [»] scaffold0210 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 6889430 - 6889776
Alignment:
| Q |
1 |
ttttccaacttgcttattttcatgtcacactttaacttctctcaaacttgttattaacaatcctacactctatgcgggaacattatttcctagttctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
6889430 |
ttttccaacttgcttattttcatgtcacactttaacttctctcaaacttgttattaaccaccctacactctatgcgggaacattatttcctagttctctt |
6889529 |
T |
|
| Q |
101 |
aatttgccagcattagccaccttgttcctagagtcattcacctttcttgttgacgatgatggtcatgctgagcctttttcggcatttagtagtttgaata |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6889530 |
aatttgccagcattagccaccttgtttctagagtcattcacctttcctgttgacgatgatggtcatactgagcctttttcggcatttagtagtttgaata |
6889629 |
T |
|
| Q |
201 |
gtttgatcattcgggattgtaaagttcttgatgaacaaaacctctggatattaagtgctacacttgccaatttaactttagacactggtagggcctacaa |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6889630 |
gtttgatcattcggggttgtaaagttcttgatgaacaaaacctctggatattaagtgctacacttgccaatttaactttagacactggttgggcctacaa |
6889729 |
T |
|
| Q |
301 |
ttatggcaaaatcgagttatctactccaagtctttgcacctttgtct |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6889730 |
ttatggcaaaatcgagttatctactccaagtctttgcacctttgtct |
6889776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 6844435 - 6844775
Alignment:
| Q |
1 |
ttttccaacttgcttattttcatgtcacactttaacttctctcaaacttgttattaacaatcctacactctatgcgggaacattatttcctagttctctt |
100 |
Q |
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||||||||||||||| |||||||||| ||||||||||| ||| ||||| | | ||| | |||||| ||| ||||||||||||||||| ||| ||| |
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| T |
6844435 |
ttttccaacttgcttcttttcatgtcgcactttaacttatcttaaactggctcttattcaccctacaaattatatgggaacattatttcctatttcgctt |
6844534 |
T |
|
| Q |
101 |
aatttgccagcattagccaccttgttcctagagtcattcacctttcttgttgacgatgatggtcatgctgagcctttttcggcatttagtagtttgaata |
200 |
Q |
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|||||||||||||||||||||||| |||||||| |||| ||||| ||||| |||||||||| || ||| ||||||||||||||||| |||||||||| |
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| T |
6844535 |
gatttgccagcattagccaccttgtctctagagtcgttcatctttcctgttggcgatgatggttgtgttgaccctttttcggcatttagcagtttgaata |
6844634 |
T |
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| Q |
201 |
gtttgatcattcgggattgtaaagttcttgatgaacaaaacctctggatattaagtgctacacttgccaatttaactttagacactggtagggcctacaa |
300 |
Q |
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||||||| |||||| | |||| |||||||| | ||||||||||||| |||| |||||||||||||| |||||||| |||| | | | || |
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| T |
6844635 |
gtttgattattcggtactgtagagttcttggtcaacaaaacctctgtatatcaagtgctacacttgatgatttaactataga------aaaacacaataa |
6844728 |
T |
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| Q |
301 |
ttatggcaaaatcgagttatctactccaagtctttgcacctttgtct |
347 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
6844729 |
atatgacaaaattgagttatctactccaagtctttgcacctttgtct |
6844775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 85 - 273
Target Start/End: Complemental strand, 30597920 - 30597732
Alignment:
| Q |
85 |
atttcctagttctcttaatttgccagcattagccaccttgttcctagagtcattcacctttcttgttgacgatgatggtcatgctgagcctttttcggca |
184 |
Q |
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|||||||| || |||||||||||||||||| ||||||||| |||||||||||| ||||| ||||| || |||||| ||||||||||||||||||| |
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| T |
30597920 |
atttcctaagtcccttaatttgccagcattaaccaccttgtctctagagtcattcgccttttgtgttggtgacgatggttgtgctgagcctttttcggca |
30597821 |
T |
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| Q |
185 |
tttagtagtttgaatagtttgatcattcgggattgtaaagttcttgatgaacaaaacctctggatattaagtgctacacttgccaattt |
273 |
Q |
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|| | |||||||| | |||||| |||| | ||||||| |||||||||| | ||| |||||| |||| ||||| ||||||| ||||||| |
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| T |
30597820 |
ttaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgcatatcaagtgttacacttaccaattt |
30597732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 6849014 - 6849152
Alignment:
| Q |
142 |
ctttcttgttgacgatgatggtcatgctgagcctttttcggcatttagtagtttgaatagtttgatcattcgggattgtaaagttcttgatgaacaaaac |
241 |
Q |
| |
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||||| ||||| ||||||||| |||||| |||||||| |||||||| ||||||| |||||||||||||| |||||| ||||||| || ||||||| |
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| T |
6849014 |
ctttcatgttggtgatgatggttgtgctgaacctttttccgcatttagctgtttgaacagtttgatcattcgttattgtagagttcttaatagacaaaac |
6849113 |
T |
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| Q |
242 |
ctctggatattaagtgctacacttgccaatttaacttta |
280 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |
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| T |
6849114 |
ctctgcatatcaagtgctacacttgccaatttaacttta |
6849152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 6849172 - 6849210
Alignment:
| Q |
305 |
ggcaaaatcgagttatctactccaagtctttgcaccttt |
343 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
6849172 |
ggcataatcgagttatctactccaagtctttgcaccttt |
6849210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6848875 - 6848926
Alignment:
| Q |
1 |
ttttccaacttgcttattttcatgtcacactttaacttctctcaaacttgtt |
52 |
Q |
| |
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|||| |||||||||| ||||| |||||||||||||||||||| | ||||||| |
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| T |
6848875 |
tttttcaacttgcttcttttcctgtcacactttaacttctcttacacttgtt |
6848926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 273
Target Start/End: Complemental strand, 15942 - 15863
Alignment:
| Q |
194 |
ttgaatagtttgatcattcgggattgtaaagttcttgatgaacaaaacctctggatattaagtgctacacttgccaattt |
273 |
Q |
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||||||| ||||||||||||| || || |||||||||||| ||||||||||| |||| |||||| |||||||||||||| |
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| T |
15942 |
ttgaatactttgatcattcggaatcgtcaagttcttgatgcacaaaacctctacatatcaagtgccacacttgccaattt |
15863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 16099 - 16059
Alignment:
| Q |
2 |
tttccaacttgcttattttcatgtcacactttaacttctct |
42 |
Q |
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|||||| ||||| | |||||||||||||||||||||||||| |
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| T |
16099 |
tttccaccttgccttttttcatgtcacactttaacttctct |
16059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 5362805 - 5362847
Alignment:
| Q |
82 |
attatttcctagttctcttaatttgccagcattagccaccttg |
124 |
Q |
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| T |
5362805 |
attatttccgagttctctgaatttgccagcattaaccaccttg |
5362847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 5368021 - 5368062
Alignment:
| Q |
82 |
attatttcctagttctcttaatttgccagcattagccacctt |
123 |
Q |
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||||||||| |||||||| ||||||||||||||| ||||||| |
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| T |
5368021 |
attatttccgagttctctgaatttgccagcattaaccacctt |
5368062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 13485743 - 13485703
Alignment:
| Q |
2 |
tttccaacttgcttattttcatgtcacactttaacttctct |
42 |
Q |
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||||| |||||||||||||||||||||||| |||| ||||| |
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| T |
13485743 |
tttccgacttgcttattttcatgtcacactctaacatctct |
13485703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 7174972 - 7174891
Alignment:
| Q |
194 |
ttgaatagtttgatcattcgggattgtaaagttcttgatgaacaaaacctctggatattaagtgctacacttgccaatttaa |
275 |
Q |
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||||||||||||| | | || ||||||| ||||||| | |||||||| |||| |||| ||||| |||||||||||||||| |
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| T |
7174972 |
ttgaatagtttgaccctacgatattgtaaggttcttggtaaacaaaacatctgcatatcaagtgtcacacttgccaatttaa |
7174891 |
T |
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Back To:
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