View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_low_11 (Length: 359)
Name: NF11804_low_11
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 31561094 - 31561409
Alignment:
| Q |
18 |
aatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaacttgaacaatcacatat-ctctagactttg |
116 |
Q |
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| T |
31561094 |
aatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaacttgaacaatcacatattctctagactttg |
31561193 |
T |
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| Q |
117 |
cggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaagagctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31561194 |
cggattcatccaccttggcttggaggatgtaatcggtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaagagctt |
31561293 |
T |
|
| Q |
217 |
ctgtatgaaaaactctgaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaaaattcacgaaagcaattaataag |
316 |
Q |
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| T |
31561294 |
ctgtatgaaaaactctcaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaattctcacaaaagccattactaaa |
31561393 |
T |
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| Q |
317 |
cagcacaaaactatca |
332 |
Q |
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|||||| ||||||||| |
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| T |
31561394 |
cagcaccaaactatca |
31561409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 113 - 359
Target Start/End: Complemental strand, 31877503 - 31877261
Alignment:
| Q |
113 |
tttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaaga |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31877503 |
tttgtggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcacg----gatatatgttgttattccaacagttaaga |
31877408 |
T |
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| Q |
213 |
gcttctgtatgaaaaactctgaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaaaattcacgaaagcaattaa |
312 |
Q |
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| T |
31877407 |
gcttctgtatgaaaaactctcaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaagtctcacaaaagccattac |
31877308 |
T |
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| Q |
313 |
taagcagcacaaaactatcaccaagcggggatagctcagttgggaga |
359 |
Q |
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||| |||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
31877307 |
taaacagcaccaaactatcatcaagcggggatagctcagttgggaga |
31877261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 31547742 - 31547832
Alignment:
| Q |
269 |
ctagaaaattgtaaaagtattctaaaattcacgaaagcaattaataagcagcacaaaactatcaccaagcggggatagctcagttgggaga |
359 |
Q |
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| T |
31547742 |
ctagaaaattgtaaaagtattctaaaattcacaaaagcaattagtaagcagcacgaaactatcaccaagcggggatagctcagttgggaga |
31547832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 31559304 - 31559452
Alignment:
| Q |
113 |
tttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaaga |
212 |
Q |
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|||| |||||||||||||||||||| ||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
31559304 |
tttgtggattcatccaccttggcttagaggatgtaattggtctcaaggttaatttgatcagt----tcactgatatatgttgttattccaacagttaaga |
31559399 |
T |
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| Q |
213 |
gcttctgtatgaaaaactctgaccatatttttcatatgcttccccatcatttc |
265 |
Q |
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|||||| | | ||||||||||| |||| ||||||| | |||||||||||| |
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| T |
31559400 |
gcttctacaagcgaaactctgacctgatttctcatatggtcccccatcatttc |
31559452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 31877620 - 31877529
Alignment:
| Q |
25 |
gttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaacttgaacaatcacata-tctctagacttt |
115 |
Q |
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||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
31877620 |
gttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgtacaacttggacaatcacatattctctagacttt |
31877529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 31559111 - 31559181
Alignment:
| Q |
17 |
aaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaa |
87 |
Q |
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| T |
31559111 |
aaatatcagttacagccctccaacagaagacaatattcactgtcgcggatctatcctcagcctatctacaa |
31559181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 31556306 - 31556384
Alignment:
| Q |
122 |
tcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattc |
200 |
Q |
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|||||||| ||||||||||||||||||| ||||||| || ||||||||||| || || ||||||||||| ||| |||| |
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| T |
31556306 |
tcatccactttggcttggaggatgtaattggtctcaatgttaatttgatcaagtcgctgactgatatatgatgtaattc |
31556384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31556104 - 31556173
Alignment:
| Q |
20 |
tatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaact |
89 |
Q |
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| T |
31556104 |
tatcagttacagccctccaactgaagacaatattcactgtcgcggatctattatcagcctatgtacaact |
31556173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 31559210 - 31559280
Alignment:
| Q |
52 |
ttcactgtcgagaatctatcttcaacctatg----tacaacttgaacaatcacata-tctctagactttgc |
117 |
Q |
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| T |
31559210 |
ttcactgtcgcggatctatcttcaacctatgtacatacaacttggacaatcacatattctctagactttgc |
31559280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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