View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11804_low_12 (Length: 340)

Name: NF11804_low_12
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11804_low_12
NF11804_low_12
[»] chr6 (11 HSPs)
chr6 (19-327)||(6466095-6466403)
chr6 (166-307)||(6519819-6519960)
chr6 (19-129)||(6519678-6519788)
chr6 (166-290)||(6506279-6506403)
chr6 (19-129)||(6472148-6472258)
chr6 (173-290)||(6472308-6472425)
chr6 (19-60)||(6529228-6529269)
chr6 (239-290)||(13035068-13035119)
chr6 (232-280)||(6515425-6515473)
chr6 (235-296)||(6461139-6461200)
chr6 (20-60)||(6506515-6506555)
[»] chr7 (1 HSPs)
chr7 (157-314)||(9664549-9664706)
[»] chr4 (1 HSPs)
chr4 (157-314)||(13535573-13535730)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 6466403 - 6466095
Alignment:
Q  19 attcatccatatctcatcaaatcttcaaactcatcactttctctttgttacccatctcgtttcttcaactcttctttcatataccaagttttcaaccctg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6466403 attcatccatatctcatcaaatcttcaaactcatcactttctctttcttacccatctcgtttcttcaactcttctttcatataccaagttttcaaccctg 6466304  T
Q  119 atctcaccatatccagtcaaaaaatcgaacctttatctcattccaatcacaaaatctcttcttacaatgatcttagtgttacattggatataccttcttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  6466303 atctcaccatatccagtcaaaaaatcgaacctttatctcattccaatcacaaaatctcttcttacaatgatctcagtgttacattggatataccttcatc 6466204  T
Q  219 aaatctacggttttttcttgttagaggaagtccctttttgacattctctgtaacacaaccaacacctctttcaatcacaacaatccatgcaattcttagt 318  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6466203 aaatctgcggttttttcttgttagaggaagtccctttttgacattctctgtaacacaaccaacacctctttcaatcacaacaatccatgcaattcttagt 6466104  T
Q  319 tttagttct 327  Q
    |||||||||    
T  6466103 tttagttct 6466095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 6519819 - 6519960
Alignment:
Q  166 cacaaaatctcttcttacaatgatcttagtgttacattggatataccttcttcaaatctacggttttttcttgttagaggaagtccctttttgacattct 265  Q
    |||| |||||||||||||||||| || |||||||| ||||| || |||||||||||| |||| |||||||||||||| |||||||| ||||||||||| |    
T  6519819 cacataatctcttcttacaatgacctcagtgttaccttggaaatcccttcttcaaatttacgtttttttcttgttaggggaagtccttttttgacatttt 6519918  T
Q  266 ctgtaacacaaccaacacctctttcaatcacaacaatccatg 307  Q
    |||| ||||||| ||| | ||||||  |||| |||| |||||    
T  6519919 ctgtcacacaactaacccatctttctttcactacaagccatg 6519960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 6519678 - 6519788
Alignment:
Q  19 attcatccatatctcatcaaatcttcaaactcatcactttctctttgttacccatctcgtttcttcaactcttctttcatataccaagttttcaaccctg 118  Q
    ||||||||||| ||||| ||||| |||||||||||||||||| ||| ||||||||| |||||||| ||||||||| | |||| ||||||||||||  |||    
T  6519678 attcatccatacctcattaaatcatcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctg 6519777  T
Q  119 atctcaccata 129  Q
    |||| ||||||    
T  6519778 atcttaccata 6519788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 6506403 - 6506279
Alignment:
Q  166 cacaaaatctcttcttacaatgatcttagtgttacattggatataccttcttcaaatctacggttttttcttgttagaggaagtccctttttgacattct 265  Q
    |||| |||||||||||| | ||||||  ||||||| || ||||| ||||||||||||||  | || |||||||||||||||||||| | |||||| || |    
T  6506403 cacataatctcttcttatagtgatctcggtgttaccttagatatcccttcttcaaatctcagtttctttcttgttagaggaagtccttatttgacttttt 6506304  T
Q  266 ctgtaacacaaccaacacctctttc 290  Q
    |||||||| ||||||| ||||||||    
T  6506303 ctgtaacaaaaccaacccctctttc 6506279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 6472148 - 6472258
Alignment:
Q  19 attcatccatatctcatcaaatcttcaaactcatcactttctctttgttacccatctcgtttcttcaactcttctttcatataccaagttttcaaccctg 118  Q
    |||||||| || ||||||||||| |||||||||||||||||| ||| |||||| | ||    |||||| ||  ||||||||||||||||||||||  |||    
T  6472148 attcatccttacctcatcaaatcatcaaactcatcactttctgtttcttacccttttcaccacttcaattcagctttcatataccaagttttcaatgctg 6472247  T
Q  119 atctcaccata 129  Q
    |||||||||||    
T  6472248 atctcaccata 6472258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 6472308 - 6472425
Alignment:
Q  173 tctcttcttacaatgatcttagtgttacattggatataccttcttcaaatctacggttttttcttgttagaggaagtccctttttgacattctctgtaac 272  Q
    ||||||| || | |||||| ||||| || ||||| || |||||| ||||| |  | || || ||||||||||||||||||||| ||||  | ||||||||    
T  6472308 tctcttcctatagtgatctcagtgtcaccttggacatgccttctacaaatatgagtttcttccttgttagaggaagtccctttctgactgtttctgtaac 6472407  T
Q  273 acaaccaacacctctttc 290  Q
    | ||||||||||||||||    
T  6472408 aaaaccaacacctctttc 6472425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 6529269 - 6529228
Alignment:
Q  19 attcatccatatctcatcaaatcttcaaactcatcactttct 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  6529269 attcatccatatctcatcaaatcttcagactcatcactttct 6529228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 13035068 - 13035119
Alignment:
Q  239 ttagaggaagtccctttttgacattctctgtaacacaaccaacacctctttc 290  Q
    ||||||||||||||||||||||  | ||||||||| ||||||||||||||||    
T  13035068 ttagaggaagtccctttttgactgtttctgtaacaaaaccaacacctctttc 13035119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 6515425 - 6515473
Alignment:
Q  232 tttcttgttagaggaagtccctttttgacattctctgtaacacaaccaa 280  Q
    |||||||||||||||||||| | |||||| |||||||||||| ||||||    
T  6515425 tttcttgttagaggaagtccatatttgactttctctgtaacaaaaccaa 6515473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 6461139 - 6461200
Alignment:
Q  235 cttgttagaggaagtccctttttgacattctctgtaacacaaccaacacctctttcaatcac 296  Q
    ||||| ||||||||||| ||||| || |||||||| ||| || ||||||||||||| |||||    
T  6461139 cttgtaagaggaagtccttttttaactttctctgtgacagaatcaacacctctttctatcac 6461200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 6506555 - 6506515
Alignment:
Q  20 ttcatccatatctcatcaaatcttcaaactcatcactttct 60  Q
    ||||||| || ||||||||||| ||||||||||||||||||    
T  6506555 ttcatccttacctcatcaaatcatcaaactcatcactttct 6506515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 314
Target Start/End: Original strand, 9664549 - 9664706
Alignment:
Q  157 cattccaatcacaaaatctcttcttacaatgatcttagtgttacattggatataccttcttcaaatctacggttttttcttgttagaggaagtccctttt 256  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| ||||| || ||||| || ||  | || |||| ||||||||| |||||||| |||     
T  9664549 catttcaatcataaaatatcttcttacagtgatcttagtgttactttggacattccttcatcgaacttgcgtttttatcttgttaggggaagtccatttc 9664648  T
Q  257 tgacattctctgtaacacaaccaacacctctttcaatcacaacaatccatgcaattct 314  Q
    |||| || || |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  9664649 tgactttatccgtaacaaaaccaacacctctttcaataacaacaatccatgcaattct 9664706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 314
Target Start/End: Original strand, 13535573 - 13535730
Alignment:
Q  157 cattccaatcacaaaatctcttcttacaatgatcttagtgttacattggatataccttcttcaaatctacggttttttcttgttagaggaagtccctttt 256  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| ||||| || ||||| || ||  | || |||| ||||||||| |||||||| |||     
T  13535573 catttcaatcataaaatatcttcttacagtgatcttagtgttactttggacattccttcatcgaacttgcgtttttatcttgttaggggaagtccatttc 13535672  T
Q  257 tgacattctctgtaacacaaccaacacctctttcaatcacaacaatccatgcaattct 314  Q
    |||| || || |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  13535673 tgactttatccgtaacaaaaccaacacctctttcaataacaacaatccatgcaattct 13535730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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