View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_low_16 (Length: 265)
Name: NF11804_low_16
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 31046194 - 31046339
Alignment:
| Q |
109 |
ataataaaccactaatacataatttttcttccattttcttcatcttctaccttccannnnnnncattatcttcatcaaccttcaaggnnnnnnnntccaa |
208 |
Q |
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| T |
31046194 |
ataataaaccactgatacataatttttcttccattttcttcatcttctaccttcca-ttttttcattatcttcatcaaccttcaaggaaaagaaattcaa |
31046292 |
T |
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| Q |
209 |
ataccaaagcactaaatcactgcactgcgcccgtcttcatcttcttctct |
258 |
Q |
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| T |
31046293 |
ataccaaaccactaaatcactacactg---ccatcttcatcttcttctct |
31046339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 31052482 - 31052553
Alignment:
| Q |
93 |
aagacaattaaatttaataataaaccactaatacataatttttcttccattttcttcatcttctaccttcca |
164 |
Q |
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| T |
31052482 |
aagaccattaaatctaacaataaactactgatacataatttttcttccattttcttcatcttctaccttcca |
31052553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 12154786 - 12154747
Alignment:
| Q |
122 |
aatacataatttttcttccattttcttcatcttctacctt |
161 |
Q |
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| T |
12154786 |
aatacataatttttctttccttttcttcatcttctacctt |
12154747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 10168663 - 10168595
Alignment:
| Q |
86 |
atcatgaaagacaattaaatttaataataaaccactaatacataatttttcttccattttcttcatctt |
154 |
Q |
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| T |
10168663 |
atcatgcaagaccatttaatcttataatagaccacaaacacatgatttttctttcattttcttcatctt |
10168595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 23331215 - 23331146
Alignment:
| Q |
88 |
catgaaagacaattaaatttaataataaaccactaatacataatttttcttccattttcttcatcttcta |
157 |
Q |
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| T |
23331215 |
catgcaagactattaaatctaatagtcaaccaccaacacataatttttctttccttttcttcaccttcta |
23331146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 43098144 - 43098104
Alignment:
| Q |
115 |
aaccactaatacataatttttcttccattttcttcatcttc |
155 |
Q |
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| T |
43098144 |
aaccaccaacacataatttttctttcattttcttcatcttc |
43098104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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