View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_low_21 (Length: 240)
Name: NF11804_low_21
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_low_21 |
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| [»] scaffold0458 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 24061416 - 24061264
Alignment:
| Q |
85 |
tctaaattatgttatgacttatggcatgcatgaagatactgtatatgtcaacaatttcactaacttgatgcttcatctggttttgcagctgtagttgctc |
184 |
Q |
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| T |
24061416 |
tctatattatgtcatgacttatggcatgcatgaagatactttatatgtcaacgatttcactaacatgatgcttcatgtgggtttgcagctgtggttgctc |
24061317 |
T |
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| Q |
185 |
aagggttcgtggcagttaacataacatttcgcaacaccgctggagcagcaaaa |
237 |
Q |
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| T |
24061316 |
aagggttcgtggcagttaacataacatttcgcaacaccgctggagcagcaaaa |
24061264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 24061543 - 24061462
Alignment:
| Q |
8 |
gacatcaaatcacaaaattatttagtaatctatttcgcgaaattggtttgaataacgattgataattttggttggtttctaa |
89 |
Q |
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| T |
24061543 |
gacatcaaatcacaaaattatttagtaatctatttcgcgaaattggtttgaataacgattgataattttggttggtttctaa |
24061462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 39450741 - 39450854
Alignment:
| Q |
115 |
tgaagatactgtatatgtcaacaatttcactaacttgatgcttcatctggttttgcagctgtagttgctcaagggttcgtggcagttaacataacatttc |
214 |
Q |
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| T |
39450741 |
tgaagataatctataggttaaaaatttcactaatttgacgtttcttgtgaattttcagctgtagttggtcaagggtttgtggcagttaacataacatttc |
39450840 |
T |
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| Q |
215 |
gcaacaccgctgga |
228 |
Q |
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| T |
39450841 |
gcaacaccgctgga |
39450854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 39460128 - 39460241
Alignment:
| Q |
115 |
tgaagatactgtatatgtcaacaatttcactaacttgatgcttcatctggttttgcagctgtagttgctcaagggttcgtggcagttaacataacatttc |
214 |
Q |
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| T |
39460128 |
tgaagataatctataggttaaaaatttcactaatttgacgtttcttgtgaattttcagctgtagttggtcaagggtttgtggcagttaacataacatttc |
39460227 |
T |
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| Q |
215 |
gcaacaccgctgga |
228 |
Q |
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| T |
39460228 |
gcaacaccgctgga |
39460241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 39471613 - 39471726
Alignment:
| Q |
115 |
tgaagatactgtatatgtcaacaatttcactaacttgatgcttcatctggttttgcagctgtagttgctcaagggttcgtggcagttaacataacatttc |
214 |
Q |
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| T |
39471613 |
tgaagataatctataggttaaaaatttcactaatttgacgtttcttgtgaattttcagctgtagttggtcaagggtttgtggcagttaacataacatttc |
39471712 |
T |
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| Q |
215 |
gcaacaccgctgga |
228 |
Q |
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| T |
39471713 |
gcaacaccgctgga |
39471726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 2880 - 2767
Alignment:
| Q |
115 |
tgaagatactgtatatgtcaacaatttcactaacttgatgcttcatctggttttgcagctgtagttgctcaagggttcgtggcagttaacataacatttc |
214 |
Q |
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| T |
2880 |
tgaagataatctataggttaaaaatttcactaatttgacgtttcttgtgaattttcagctgtagttggtcaagggtttgtggcagttaacataacatttc |
2781 |
T |
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| Q |
215 |
gcaacaccgctgga |
228 |
Q |
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| T |
2780 |
gcaacaccgctgga |
2767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 12921 - 12808
Alignment:
| Q |
115 |
tgaagatactgtatatgtcaacaatttcactaacttgatgcttcatctggttttgcagctgtagttgctcaagggttcgtggcagttaacataacatttc |
214 |
Q |
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| T |
12921 |
tgaagataatctataggttaaaaatttcactaatttgacgtttcttgtgaattttcagctgtagttggtcaagggtttgtggcagttaacataacatttc |
12822 |
T |
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| Q |
215 |
gcaacaccgctgga |
228 |
Q |
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| T |
12821 |
gcaacaccgctgga |
12808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 44474684 - 44474623
Alignment:
| Q |
167 |
ttgcagctgtagttgctcaagggttcgtggcagttaacataacatttcgcaacaccgctgga |
228 |
Q |
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| T |
44474684 |
ttgcagctgtggttgcacaaggattcttagcggttaacatgacatttcgcaacacggctgga |
44474623 |
T |
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