View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_low_24 (Length: 236)
Name: NF11804_low_24
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_low_24 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 3190419 - 3190222
Alignment:
| Q |
26 |
gtcaacaattgaaactacaagctaccgttttctcaatttaactctctcatgtagtatattaacccattttattccagtctcgaggtaagggtcaatccac |
125 |
Q |
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| T |
3190419 |
gtcaacaattgaaactacaagctaccgttttctcaattgaactctctcatctagtatataaacccattatattccagtctcgaggtaaggctcattccac |
3190320 |
T |
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| Q |
126 |
tgtctgttcttccattcctttcttcaattcttttaatttcattctaaataaagtcatcttttgttctcccattagtactcttcgggggaggataattctt |
225 |
Q |
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| T |
3190319 |
tgtctgtt-------------cttcaattcttttaatttcattctaaataaagtcatcttttgttctcccattagtactcttcggtggaggataattctt |
3190233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 22636566 - 22636524
Alignment:
| Q |
194 |
ccattagtactcttcgggggaggataattcttgatgtcttgtt |
236 |
Q |
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| T |
22636566 |
ccattagtactcttcggtggaggataattcttgaagtcttgtt |
22636524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 17852207 - 17852031
Alignment:
| Q |
32 |
aattgaaactacaagctaccgttttctcaatttaactctctcatgtagtatattaacccatttt---attccagtctcgaggtaagggtcaatccactgt |
128 |
Q |
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| T |
17852207 |
aattgaaactacaagccaccattttctcaattgaactctcccatttattatataaatgcttcatgccattcaagtcttgaggtaagggtcatttcattgt |
17852108 |
T |
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| Q |
129 |
ctgttcttccattcctttcttcaattcttttaatttcattctaaataaagtca-tcttttgttctcccattagtactct |
206 |
Q |
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| T |
17852107 |
ctgttcttctattc-tttcttcaatccttt-aatttcattctaaataaagtcacccttttgttcttccatttgtactct |
17852031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 13652470 - 13652581
Alignment:
| Q |
96 |
attccagtctcgaggtaagggtcaatccactgtctgttcttccattcctttcttcaattcttttaatttcattctaaataaagtcatc--ttttgttctc |
193 |
Q |
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| T |
13652470 |
attccagtcttgaggtaagggtgatttcattgtttgttcttctattc-tttcttcaatccttttaatctcattctaaataaagtcatcctttttgttctt |
13652568 |
T |
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| Q |
194 |
ccattagtactct |
206 |
Q |
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| T |
13652569 |
ccacttgtactct |
13652581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 13660595 - 13660706
Alignment:
| Q |
96 |
attccagtctcgaggtaagggtcaatccactgtctgttcttccattcctttcttcaattcttttaatttcattctaaataaagtcatc--ttttgttctc |
193 |
Q |
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| T |
13660595 |
attccagtcttgaggtaagggtgatttcattgtttgttcttctattc-tttcttcaatccttttaatctcattctaaataaagtcatcctttttgttctt |
13660693 |
T |
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| Q |
194 |
ccattagtactct |
206 |
Q |
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| T |
13660694 |
ccacttgtactct |
13660706 |
T |
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