View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_low_3 (Length: 474)
Name: NF11804_low_3
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 16366664 - 16366962
Alignment:
| Q |
18 |
aggcctgtctctatgcaccttatatcaacagtgccaacccaatcagcaccaggaactggaagaattctaaagaaaaggttaggagaattcatctcatatg |
117 |
Q |
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| T |
16366664 |
aggcctgtctctatgcaccttatatcaacagtgccaacccaatcagcaccaggaactggaagaattctaaagaaaaggttaggagaattcatctcatatg |
16366763 |
T |
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| Q |
118 |
tttctccatgatctaagagcttcaattgccttttaccgcggacttgagcttcaactgatgtgcctgcacatttgatttaagatactcaatctacacaatt |
217 |
Q |
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| T |
16366764 |
tttccccatgatctaagagcttcaattgccttttaccgcggacttgagcttcaactgatgtgcctacacatttgatttaagatactcaatctacacaatt |
16366863 |
T |
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| Q |
218 |
ttttacactaatgagttgtatttagaaaaaccgacaaggacacgaatactgaatacgacacaaacattgacacatatacat-ggtaataatttgaaaaa |
315 |
Q |
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| T |
16366864 |
ttttacactaatgagttgtatttagaaaaaccgacaaggacacgaatactgaatacgacacaaacattgaaacataaacatcagtaataatttgaaaaa |
16366962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 307 - 462
Target Start/End: Original strand, 16367346 - 16367504
Alignment:
| Q |
307 |
tttgaaaaattagaatcttatggaaatgattgatatattctatttcattgc-------aagtgaatgagatggaaatacttatgatccaagaaaagttca |
399 |
Q |
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| T |
16367346 |
tttgaaaaattagaatcttatggaaatgat----atattctatttcattgcaacttgcaagtgaatgagatggaaatacttatgatccaagaaaagttca |
16367441 |
T |
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| Q |
400 |
agatatataccataaaatttaggaacaggttgctgagaccatgtgatttctatgttttccttc |
462 |
Q |
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| T |
16367442 |
agatatataccataaaatttaggaacaggttgctgagaccatgtgatttctatgttttccttc |
16367504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 16355853 - 16355931
Alignment:
| Q |
51 |
ccaacccaatcagcaccaggaactggaagaattctaaagaaaaggttaggagaattcatctcatatgtttctccatgat |
129 |
Q |
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| T |
16355853 |
ccaatccaatcaactccagtaacaggaagaattcttataaagagatttggagaattcatttcatatgtttctccatgat |
16355931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 52941375 - 52941295
Alignment:
| Q |
49 |
tgccaacccaatcagcaccaggaactggaagaattctaaagaaaaggttaggagaattcatctcatatgtttctccatgat |
129 |
Q |
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| T |
52941375 |
tgccaacccaatcaataccaggaattggaagaaatctgaataagaaattaggacaattcatttcatatgtctctccatgat |
52941295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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