View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_low_7 (Length: 377)
Name: NF11804_low_7
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_low_7 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 7425942 - 7425576
Alignment:
| Q |
1 |
tatctgcattcaaaatgagatgtccctgctgcactacaacagactcctgcacctgttacagaaaaggcactctcaaatgccaaaaattacaaccctgcta |
100 |
Q |
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| T |
7425942 |
tatctgcattcaaaatgagatgtccctgctgcactacaacagacgcctgcacctgttacagaaaaggcactctcaaatgccaaaaattataaccctgcta |
7425843 |
T |
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| Q |
101 |
aagccatatcctcttgctaccaaattgaagtaatttaataataaccaccttagctcctatactcacagcaccacaagactccctctgcttccaaacaaaa |
200 |
Q |
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| T |
7425842 |
aagccatatcctcttgctaccaaattgaagtaatttaataataaccaccttagctcctatactcacagcaccacaagactccctctgcttccaaacaaaa |
7425743 |
T |
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| Q |
201 |
gctcgagacattaagagaacatcccctcttcagcagaccgacagaaacaccacagtcagcaacaacaagaaaacaccacagacagacccccacctcagac |
300 |
Q |
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| T |
7425742 |
gctcgagacattaagagaacattccctcttcagcagaccgacagaaacaccacagtcagcaacaacaagaaaacaccacagacagacccccacctcagac |
7425643 |
T |
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| Q |
301 |
tatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcgtaaataatctgtg |
367 |
Q |
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| T |
7425642 |
tatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcataaataatctgtg |
7425576 |
T |
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Target: scaffold0066 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 165 - 351
Target Start/End: Original strand, 17953 - 18139
Alignment:
| Q |
165 |
acagcaccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacatcccctcttcagcagaccgacagaaacaccacagtcagcaaca |
264 |
Q |
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|||||| || |||||||||||||||||||| ||||||| | |||| || ||||| |||||||| ||| | ||||| |||||||||||| ||||| || |
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| T |
17953 |
acagcatcataagactccctctgcttccaaccaaaagcaccagaccctatgagaatgtcccctctacagacggccgaccgaaacaccacagccagcagca |
18052 |
T |
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| Q |
265 |
acaagaaaacaccacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacaca |
351 |
Q |
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||||||| ||||| ||||| |||||| |||||||||||||||||| || || ||| ||||| | ||||||||||||||||||||| |
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| T |
18053 |
gcaagaaagcaccatagacacaccccctcctcagactatgaatcaaaaaactgccaaactgccgcaacttcggatatttcagacaca |
18139 |
T |
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