View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11804_low_8 (Length: 369)
Name: NF11804_low_8
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 35168572 - 35168923
Alignment:
| Q |
1 |
aaacaaactttttcagcttcaatgagatcaagattcatcggatctgaactaagctgcctttggacgtcaactaaagtagttctagcatcttcaacttttt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
35168572 |
aaacaaactttttcagcttcaatgagatcaagattcatcggatctgaactaagctgcctttggacatcaactaaagcagttctagcatcttcaacttttt |
35168671 |
T |
|
| Q |
101 |
tggtagtaccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaaccatatattagtcaagagattagtatgcaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35168672 |
tggtagtaccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaaccatatattagtcaagagattagtatgcaaatt |
35168771 |
T |
|
| Q |
201 |
ctgaccctatttctcctgtatcaacgaaggaaaaaagatgatggtcagtcaatacattaataaatacgaaaggagtattctttggagaagcaggacaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35168772 |
ctgaccctatttctcctgtatcaacgaaggaaaaaagatgatggtcagtcaatacattaataaataggaaaggagtattctttggagaagcaggacaaga |
35168871 |
T |
|
| Q |
301 |
catatccatacatataggacagtgatcagatactcctttaggaagaacttca |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35168872 |
catatccatacatataggacagtgatcagatactcctttaggaagaacttca |
35168923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 3940305 - 3940654
Alignment:
| Q |
1 |
aaacaaactttttcagcttcaatgagatcaagattcatcggatctgaactaagctgcctttggacgtcaactaaagtagttctagcatcttcaacttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3940305 |
aaacaaactttttcagcttcaatgagatcaagattcatcggatctgaactaagctgcctttggacgtcaactaaagcagttctagcatcttcaacttttt |
3940404 |
T |
|
| Q |
101 |
tggtagtaccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaaccatatattagtcaagagattagtatgcaaatt |
200 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3940405 |
tggcaataccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaaccatatattagtcaagagattagtatgcaaatt |
3940504 |
T |
|
| Q |
201 |
ctgaccctatttctcctgtatcaacgaaggaaaaaagatgatggtcagtcaatacattaataaatacgaaaggagtattctttggagaagcaggacaaga |
300 |
Q |
| |
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| ||||| ||||||| |||||||| | ||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
3940505 |
cggaccccatttctcttgtatcaaggcagg-aaaaagatgatggtcagtcaaatcattaataaatctaaaaggagtattcttaggagaagcaggacaaga |
3940603 |
T |
|
| Q |
301 |
catatccatacatataggacagtgatcagatactcctttaggaagaacttc |
351 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
3940604 |
catatccatagatataggacagtgatcagatgctcctttaggaagcacttc |
3940654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 33633554 - 33633886
Alignment:
| Q |
1 |
aaacaaactttttcagcttcaatgagatcaagattcatcggatctgaactaagctgcctttggacgtcaactaaagtagttctagcatcttcaacttttt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| ||||| | |||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
33633554 |
aaacaaattttttcagcttcaatgagatcaggattcataggatcagtactaagctgcttttggacatcaactaaagtagttctaacatcttcaacttttt |
33633653 |
T |
|
| Q |
101 |
tggtagtaccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaaccatatattagtcaagagattagtatgcaaatt |
200 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33633654 |
tgacaataccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaacca-----------------tagtatgcaaatt |
33633736 |
T |
|
| Q |
201 |
ctgaccctatttctcctgtatcaacgaaggaaaaaagatgatggtcagtcaatacattaataaatacgaaaggagtattctttggagaagcaggacaaga |
300 |
Q |
| |
|
| ||||| ||||||| |||||||| | ||| ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
33633737 |
cggaccccatttctcttgtatcaaggcagg-aaaaagatgatggtcagtcaaaacattaataaatctaaaaggagtattcttaggagaagcaggacaaga |
33633835 |
T |
|
| Q |
301 |
catatccatacatataggacagtgatcagatactcctttaggaagaacttc |
351 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
33633836 |
catatccatagatataggacagtgatcagatactcctttaggaagcacttc |
33633886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 30282571 - 30282752
Alignment:
| Q |
1 |
aaacaaactttttcagcttcaatgagatcaagattcatcggatctgaactaagctgcctttggacgtcaactaaagtagttctagcatcttcaacttttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
30282571 |
aaacaaactttttcagcttcaatgagatcaagattcatcggatctgaactaagctgcctttggacgtcaactaaagcagttctagcatcttcaacttttt |
30282670 |
T |
|
| Q |
101 |
tggtagtaccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaaccatatattagtcaa |
182 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30282671 |
tggtattaccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaaccatatattagtcaa |
30282752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 40951337 - 40951241
Alignment:
| Q |
80 |
ttctagcatcttcaacttttttggtagtaccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaaccatatatt |
176 |
Q |
| |
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|||| |||||||||| |||||||||| |||||||||| | ||| |||||||||||| | ||||| ||||| || |||||||||||||||||||| |
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| T |
40951337 |
ttctcgcatcttcaatttttttggtaataccttgaaagtacttagtatttaactctttcaactctttcttcaaagccttcaacttgaaccatatatt |
40951241 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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