View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11804_low_9 (Length: 368)
Name: NF11804_low_9
Description: NF11804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11804_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 35168596 - 35168291
Alignment:
| Q |
1 |
tcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatctagaaatctagagctaattggattcagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35168596 |
tcattgaagctgaaaaagtttgtttgtcctctcttaaaaagtggagtactatagaggagcagatatggatctagaaatctagagctaattggattcagct |
35168497 |
T |
|
| Q |
101 |
tggggactcaacacaaaatttttccatgcctttgcaaaggaaagaagatgtcagaatatcattaagttcctcataacagaagatggcaccaaaattgaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35168496 |
tggggactcaacacaaaatttttccatgcctttgcaaaggaaagaagatgtcagaatatcattaagttcctcataacagaagatggcaccaaaattgaca |
35168397 |
T |
|
| Q |
201 |
agcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttctgttgattcgttacctatggtggacaaaaatatcggcaagag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35168396 |
agcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttctgttgattcgttacctatggtggacaaaaatatcgtcaagag |
35168297 |
T |
|
| Q |
301 |
aggtcc |
306 |
Q |
| |
|
|||||| |
|
|
| T |
35168296 |
aggtcc |
35168291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 35168876 - 35168923
Alignment:
| Q |
304 |
tccatacatataggacagtgatcagatactcctttaggaagaacttca |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35168876 |
tccatacatataggacagtgatcagatactcctttaggaagaacttca |
35168923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 30282595 - 30282304
Alignment:
| Q |
1 |
tcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatctagaaatctagagctaattggattcagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
30282595 |
tcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatgcagaagtctagagctaattggattcagct |
30282496 |
T |
|
| Q |
101 |
tggggactc-aacacaaaatttttccatgcctttgcaaaggaaagaagatgtcagaatatcattaagttcctcataacagaagatggcaccaaaattgac |
199 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
30282495 |
tggggactcgaacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaagttcctcataacagaagatgacaccagaattgac |
30282396 |
T |
|
| Q |
200 |
aagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttctgttgattcgttacctatggtggacaaaaatat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30282395 |
aagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttctgttgattctttacctatggtggacaaaaatat |
30282304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 3940329 - 3940038
Alignment:
| Q |
1 |
tcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatctagaaatctagagctaattggattcagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
3940329 |
tcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatgcagaagtctagagctaattggattcagct |
3940230 |
T |
|
| Q |
101 |
tggggactc-aacacaaaatttttccatgcctttgcaaaggaaagaagatgtcagaatatcattaagttcctcataacagaagatggcaccaaaattgac |
199 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
3940229 |
tggggactcgaacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaagttcctcataacagaagatgacaccagaattgac |
3940130 |
T |
|
| Q |
200 |
aagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttctgttgattcgttacctatggtggacaaaaatat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
3940129 |
aagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccgttgattcattacctatggtggacaaaaatat |
3940038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 3940608 - 3940654
Alignment:
| Q |
304 |
tccatacatataggacagtgatcagatactcctttaggaagaacttc |
350 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
3940608 |
tccatagatataggacagtgatcagatgctcctttaggaagcacttc |
3940654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 33633578 - 33633289
Alignment:
| Q |
1 |
tcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatctagaaatctagagctaattggattcagct |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
33633578 |
tcattgaagctgaaaaaatttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatgcagaagtctagagctaattggattcagct |
33633479 |
T |
|
| Q |
101 |
tggggactc-aacacaaaatttttccatgcctttgcaaaggaaagaagatgtcagaatatcattaagttcctcataacagaagatggcaccaaaattgac |
199 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33633478 |
tggggactcgaacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaagttcctcataacagaagatggcaccagaattgac |
33633379 |
T |
|
| Q |
200 |
aagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttctgttgattcgttacctatggtggacaaaaat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
33633378 |
aagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccgttgattcattacctatggtggacaaaaat |
33633289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 18263277 - 18263208
Alignment:
| Q |
221 |
gagattagagggttctatttaaaattgatgggtagttctgttgattcgttacctatggtggacaaaaatat |
291 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
18263277 |
gagattagaggcttctatt-aaaattgatgggtagttccgttgattcataacctatggtggacaaaaatat |
18263208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 33633840 - 33633886
Alignment:
| Q |
304 |
tccatacatataggacagtgatcagatactcctttaggaagaacttc |
350 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33633840 |
tccatagatataggacagtgatcagatactcctttaggaagcacttc |
33633886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 23121313 - 23121469
Alignment:
| Q |
1 |
tcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatctagaaatctagagctaattggattcagct |
100 |
Q |
| |
|
||||||||| ||||||| |||| || | |||||||||| |||||| || | || || ||||||||| | ||||||| ||||| || ||||| || || |
|
|
| T |
23121313 |
tcattgaagtggaaaaaggttgtatggcatctcttgaaatgtggagcacaaatgaagaaaagatatggcttcagaaatcaagagcaaactggatccaact |
23121412 |
T |
|
| Q |
101 |
tggggactc-aacacaaaatttttccatgcctttgcaaaggaaagaagatgtcagaa |
156 |
Q |
| |
|
|||||| || || |||||||| || ||||||| |||||| || |||||||||||||| |
|
|
| T |
23121413 |
tggggattctaatacaaaattctttcatgcctatgcaaaagagagaagatgtcagaa |
23121469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 40951392 - 40951523
Alignment:
| Q |
1 |
tcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatctagaaatctagagctaattggattcagct |
100 |
Q |
| |
|
||||||||| ||||||| |||| |||| |||||||||| |||| | || || || || ||||||||| | ||||||||||||| || ||||| || || |
|
|
| T |
40951392 |
tcattgaagtggaaaaaggttgtatgtcatctcttgaaatgtggcgcacaattgaagaaaagatatggcttcagaaatctagagcaaactggatccaact |
40951491 |
T |
|
| Q |
101 |
tggggactc-aacacaaaatttttccatgcct |
131 |
Q |
| |
|
|||||| || || |||||||| || ||||||| |
|
|
| T |
40951492 |
tggggattctaatacaaaattctttcatgcct |
40951523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University