View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11805_high_1 (Length: 672)

Name: NF11805_high_1
Description: NF11805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11805_high_1
NF11805_high_1
[»] chr5 (11 HSPs)
chr5 (79-316)||(41250471-41250713)
chr5 (328-654)||(41250757-41251060)
chr5 (437-539)||(18593572-18593675)
chr5 (438-539)||(7452918-7453020)
chr5 (474-539)||(29087808-29087873)
chr5 (437-539)||(7161662-7161765)
chr5 (445-539)||(5656749-5656844)
chr5 (438-539)||(34378429-34378531)
chr5 (476-539)||(698697-698760)
chr5 (437-530)||(18255098-18255192)
chr5 (438-527)||(18313303-18313393)
[»] chr7 (23 HSPs)
chr7 (437-539)||(31971783-31971886)
chr7 (438-539)||(47325534-47325636)
chr7 (437-539)||(5859931-5860034)
chr7 (438-539)||(10244510-10244612)
chr7 (437-539)||(42454382-42454485)
chr7 (438-539)||(25161138-25161240)
chr7 (438-539)||(44353213-44353315)
chr7 (474-539)||(38306590-38306655)
chr7 (438-535)||(6585220-6585318)
chr7 (438-539)||(33434480-33434582)
chr7 (440-539)||(37795326-37795426)
chr7 (440-539)||(37795654-37795754)
chr7 (438-539)||(3419048-3419148)
chr7 (439-531)||(3867453-3867545)
chr7 (475-539)||(41089431-41089494)
chr7 (443-539)||(43482235-43482331)
chr7 (438-535)||(34391516-34391614)
chr7 (438-511)||(35745481-35745555)
chr7 (474-539)||(3419344-3419407)
chr7 (438-538)||(48161690-48161790)
chr7 (438-497)||(40726140-40726200)
chr7 (440-534)||(11378772-11378866)
chr7 (485-539)||(40726202-40726256)
[»] chr1 (15 HSPs)
chr1 (437-539)||(31584688-31584790)
chr1 (438-539)||(30685573-30685675)
chr1 (438-539)||(7002517-7002619)
chr1 (445-535)||(46814121-46814212)
chr1 (438-539)||(40216155-40216257)
chr1 (438-534)||(14320658-14320755)
chr1 (437-539)||(24449579-24449681)
chr1 (438-539)||(6804868-6804969)
chr1 (444-532)||(27031496-27031585)
chr1 (437-539)||(24684141-24684243)
chr1 (474-539)||(5459490-5459555)
chr1 (474-539)||(5389109-5389174)
chr1 (486-535)||(24659264-24659313)
chr1 (437-539)||(41920787-41920890)
chr1 (488-539)||(46692519-46692570)
[»] chr3 (20 HSPs)
chr3 (438-539)||(2392152-2392254)
chr3 (438-539)||(2393915-2394017)
chr3 (438-539)||(45164183-45164285)
chr3 (437-539)||(31483210-31483313)
chr3 (437-538)||(34475406-34475508)
chr3 (438-538)||(21343678-21343779)
chr3 (437-533)||(50305222-50305319)
chr3 (444-535)||(40023224-40023316)
chr3 (437-539)||(47236028-47236131)
chr3 (438-539)||(19176836-19176938)
chr3 (438-535)||(23327997-23328095)
chr3 (474-539)||(30352125-30352190)
chr3 (474-539)||(43012707-43012772)
chr3 (445-539)||(17551287-17551382)
chr3 (438-532)||(25506719-25506814)
chr3 (477-535)||(45399119-45399177)
chr3 (475-539)||(9583740-9583804)
chr3 (444-535)||(50559978-50560070)
chr3 (438-539)||(53248230-53248332)
chr3 (438-534)||(4463734-4463831)
[»] chr4 (19 HSPs)
chr4 (437-539)||(4306035-4306137)
chr4 (437-539)||(30964767-30964870)
chr4 (437-539)||(35329337-35329440)
chr4 (438-538)||(7703018-7703118)
chr4 (438-539)||(27555579-27555682)
chr4 (454-539)||(20464919-20465005)
chr4 (443-535)||(31050315-31050408)
chr4 (438-534)||(46698428-46698525)
chr4 (442-534)||(49528421-49528514)
chr4 (437-532)||(2826118-2826214)
chr4 (476-535)||(52868800-52868859)
chr4 (438-539)||(8705789-8705891)
chr4 (438-539)||(36689454-36689556)
chr4 (439-539)||(11281375-11281476)
chr4 (444-532)||(35341006-35341097)
chr4 (438-520)||(9750116-9750198)
chr4 (438-503)||(30167212-30167278)
chr4 (476-539)||(8255357-8255420)
chr4 (476-539)||(8268775-8268838)
[»] scaffold0172 (1 HSPs)
scaffold0172 (439-532)||(19255-19349)
[»] chr8 (23 HSPs)
chr8 (438-539)||(12897925-12898027)
chr8 (438-539)||(31207011-31207113)
chr8 (441-532)||(35815896-35815988)
chr8 (438-539)||(22773951-22774053)
chr8 (442-539)||(16457128-16457226)
chr8 (438-539)||(20138756-20138858)
chr8 (438-539)||(32065934-32066035)
chr8 (437-535)||(15821025-15821123)
chr8 (438-539)||(9519836-9519938)
chr8 (442-539)||(37986508-37986606)
chr8 (475-539)||(41893093-41893156)
chr8 (438-535)||(3584071-3584170)
chr8 (438-539)||(24995044-24995146)
chr8 (438-539)||(36631153-36631254)
chr8 (474-539)||(27889176-27889241)
chr8 (474-539)||(27947834-27947899)
chr8 (439-539)||(35821585-35821685)
chr8 (437-498)||(9659473-9659535)
chr8 (474-535)||(10837923-10837984)
chr8 (492-539)||(34388711-34388758)
chr8 (437-530)||(13538324-13538418)
chr8 (437-530)||(13686056-13686150)
chr8 (479-524)||(38577477-38577522)
[»] chr2 (19 HSPs)
chr2 (438-536)||(39338510-39338609)
chr2 (438-535)||(14106172-14106269)
chr2 (438-531)||(14436916-14437010)
chr2 (437-532)||(43816095-43816191)
chr2 (437-532)||(5254590-5254685)
chr2 (438-539)||(387506-387608)
chr2 (438-539)||(10524428-10524529)
chr2 (444-532)||(43248882-43248971)
chr2 (437-534)||(3745676-3745774)
chr2 (438-535)||(7461010-7461107)
chr2 (476-538)||(14405530-14405591)
chr2 (444-536)||(41877207-41877300)
chr2 (438-535)||(7874610-7874709)
chr2 (454-535)||(17116553-17116635)
chr2 (445-533)||(13512495-13512584)
chr2 (437-534)||(45311452-45311550)
chr2 (437-505)||(25280963-25281032)
chr2 (439-514)||(15457817-15457893)
chr2 (445-520)||(7455601-7455676)
[»] chr6 (6 HSPs)
chr6 (438-539)||(3254287-3254389)
chr6 (437-539)||(10542161-10542263)
chr6 (438-539)||(15944329-15944431)
chr6 (442-539)||(3117824-3117922)
chr6 (480-534)||(33697789-33697843)
chr6 (437-521)||(15132488-15132573)
[»] scaffold0434 (1 HSPs)
scaffold0434 (474-539)||(2359-2424)
[»] scaffold0343 (1 HSPs)
scaffold0343 (444-539)||(6035-6131)
[»] scaffold0085 (1 HSPs)
scaffold0085 (438-539)||(48665-48767)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 7e-94; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 79 - 316
Target Start/End: Original strand, 41250471 - 41250713
Alignment:
Q  79 atttaaatttaaaaggagggaaatcaggtttattttatttcttagtcttggcttgatataataaagagaaataataaaaacaagaagaagnnnnnnnn-- 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||              
T  41250471 atttaaatttaaaaggagggaaatcaggtttattttatttcttagtcttgccttgatataataaagagaaataataaaaacaagaagaagaagaagaaaa 41250570  T
Q  177 ------gatcatcgatatttgtcttaatacatgtaaaaagtcaaaacttttttaattttaattattactcggttggcaattttaccacgcttatctggta 270  Q
          ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41250571 aaaaaagatcatcgat---tgtcttaatacatgtaaaaagtcaaaacttttttaattttaattattactcggttggcaattttaccacgcttatctggta 41250667  T
Q  271 attattcacatgatcgacaatagattctatagcatcccccatgatc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41250668 attattcacatgatcgacaatagattctatagcatcccccatgatc 41250713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 328 - 654
Target Start/End: Original strand, 41250757 - 41251060
Alignment:
Q  328 tatatatataacaccattttcattatcttgaagattcattagtattcgtccttggttttaagtcagttaatcaccacctgataatgttattaaaggnnnn 427  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||             
T  41250757 tatatataaaacaccattttcattttcttgaagattcattagtattcgtccttggttttaagtcagttaatcaccacccgataatgatttt--------- 41250847  T
Q  428 nnnnnnnnngaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacacc 526  Q
             ||||||||||||||||||||||||||||||||||||| ||            ||||||||||||||||||| |||||||||||||||||||    
T  41250848 ----tttttgaatcggcaaatattattaaacatcatcctcgcaaaacgc------------aaacaagatataaatggtgccgcatatagacggtacacc 41250931  T
Q  527 ataaccacctaaatattattaatttatttgttttcattat-nnnnnnnnnnnnnnnnnnttttggtttggagactcttgtgattatggccttaacttttg 625  Q
    |||||||| |||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||| |||| ||||||    
T  41250932 ataaccacgtaaatattattaatttatttgttttcattataaaaaaagaaaaatcaaaattttggtttggagactcttgtgattatggtcttatcttttg 41251031  T
Q  626 gtttgcatggatttatgcaaacacgaagg 654  Q
    |||||||||||||||||||||||||||||    
T  41251032 gtttgcatggatttatgcaaacacgaagg 41251060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 18593675 - 18593572
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||||||||||||||||||| |||||| ||||| | |||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  18593675 gaatcggcaaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataaccacc 18593576  T
Q  536 taaa 539  Q
    ||||    
T  18593575 taaa 18593572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 7453020 - 7452918
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||||||||||  |||| | |||||||||| || || ||||||| |||||||| |||||||||||||||||||||||||||||    
T  7453020 aatcggcaaatattattaaacatcatccatgcaagacgcaaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 7452921  T
Q  537 aaa 539  Q
    |||    
T  7452920 aaa 7452918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 29087873 - 29087808
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  29087873 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacctaaa 29087808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 539
Target Start/End: Original strand, 7161662 - 7161765
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||||||||||||||||||| || ||| | ||| | ||||| |||| |||||| |||||| |||| |||| |||||||||||||||||||||| ||||    
T  7161662 gaatcggcaaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatatagacggtacaccataatcacc 7161761  T
Q  536 taaa 539  Q
    ||||    
T  7161762 taaa 7161765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 445 - 539
Target Start/End: Original strand, 5656749 - 5656844
Alignment:
Q  445 aaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||||||||||||  ||||  ||||| | ||||||||||||||||| |||||| ||||| || |||||||||||||||||  |||||||||||||    
T  5656749 aaatattattaaacgccatcaccgcaagacgcaaggtatgaacgaaataagatacaaatgatgccgcatatagacggtacatgataaccacctaaa 5656844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 34378531 - 34378429
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||| |||||||||||||||  ||||  ||||| | |||||| ||| |||| || ||||| |||||||| |||||||||||||||||||||||||| ||    
T  34378531 aatcgacaaatattattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcatatagacggtacaccataaccatct 34378432  T
Q  537 aaa 539  Q
    |||    
T  34378431 aaa 34378429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 539
Target Start/End: Complemental strand, 698760 - 698697
Alignment:
Q  476 aaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||| | |||| | |||| |||||||| |||||||||||||||||| |||||||||||||    
T  698760 aaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacactataaccacctaaa 698697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 530
Target Start/End: Original strand, 18255098 - 18255192
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataa 530  Q
    ||||||||||||||| |||||| | |||| || || | ||| |||||  ||||||||||||| |||| ||| ||||||||||||||||| |||||    
T  18255098 gaatcggcaaatattgttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcatatagacggtacatcataa 18255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 527
Target Start/End: Original strand, 18313303 - 18313393
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacacca 527  Q
    |||||| |||||||||||||| |||| |  | || | |||||||||| | ||||||||||  |||||||| ||||||||||||||||||||    
T  18313303 aatcggtaaatattattaaacgtcattcctgtaagacgcaaggtatggatgaaacaagatgcaaatggtgccgcatatagacggtacacca 18313393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 437 - 539
Target Start/End: Original strand, 31971783 - 31971886
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||||||||||||||||||  ||||| ||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  31971783 gaatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 31971882  T
Q  536 taaa 539  Q
    ||||    
T  31971883 taaa 31971886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 47325534 - 47325636
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||| ||||||||| || | |||||||||| ||||||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  47325534 aatcggcaaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 47325633  T
Q  537 aaa 539  Q
    |||    
T  47325634 aaa 47325636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 437 - 539
Target Start/End: Original strand, 5859931 - 5860034
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||||||||||||||||||| |||||| ||||| | ||| | |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  5859931 gaatcggcaaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 5860030  T
Q  536 taaa 539  Q
    ||||    
T  5860031 taaa 5860034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 10244612 - 10244510
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||||||||||||||||||  ||||  ||||| | |||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  10244612 aatcggcaaatattattaaactccatctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataaccacct 10244513  T
Q  537 aaa 539  Q
    |||    
T  10244512 aaa 10244510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 437 - 539
Target Start/End: Original strand, 42454382 - 42454485
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||| ||||||||||||||||||||||| ||||| | ||||| |||  |||||||||| || |||||||| ||||||||||| ||||||||||||||||    
T  42454382 gaatcagcaaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacc 42454481  T
Q  536 taaa 539  Q
    ||||    
T  42454482 taaa 42454485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 25161240 - 25161138
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaagc-aaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||| |||||| || || |   |||||||||||||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  25161240 aatcggcaaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacct 25161141  T
Q  537 aaa 539  Q
    |||    
T  25161140 aaa 25161138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 44353213 - 44353315
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||| ||||||||||||||  ||||| ||||| | |||| ||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  44353213 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 44353312  T
Q  537 aaa 539  Q
    |||    
T  44353313 aaa 44353315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 38306655 - 38306590
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  38306655 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaa 38306590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 535
Target Start/End: Complemental strand, 6585318 - 6585220
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||| ||||||||||||||||  ||||| ||||| | |||||| ||| ||||||||||||| |||||||| | ||||||||||||||||||||||||||    
T  6585318 aatcagcaaatattattaaacgccatccccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacc 6585220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 33434480 - 33434582
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||||||||||||||||||  ||||| ||||| | |||||||||| ||||| ||||||| |||||||   | ||||||||||||||||||||||||||    
T  33434480 aatcggcaaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacct 33434579  T
Q  537 aaa 539  Q
    |||    
T  33434580 aaa 33434582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 440 - 539
Target Start/End: Complemental strand, 37795426 - 37795326
Alignment:
Q  440 tcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaa 538  Q
    ||||||||||||||||||| || ||| | ||| | |||||||||| ||||||||||||| ||||||||||||   || ||||||||||||||||||||||    
T  37795426 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaa 37795327  T
Q  539 a 539  Q
    |    
T  37795326 a 37795326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 440 - 539
Target Start/End: Complemental strand, 37795754 - 37795654
Alignment:
Q  440 tcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaa 538  Q
    ||||||||||||||||||| || ||| | ||| | |||||||||| ||||||||||||| ||||||||||||   || ||||||||||||||||||||||    
T  37795754 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaa 37795655  T
Q  539 a 539  Q
    |    
T  37795654 a 37795654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 3419048 - 3419148
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||| ||||||||||||||| |||||| ||||| | |||||||||| ||||||||||||| ||| | || ||||||  |||||||||||||||||||||    
T  3419048 aatcgacaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgcata--gacggtacaccataaccacct 3419145  T
Q  537 aaa 539  Q
    |||    
T  3419146 aaa 3419148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 439 - 531
Target Start/End: Complemental strand, 3867545 - 3867453
Alignment:
Q  439 atcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataac 531  Q
    |||||||||||||||||||| |||||| ||||| | | |||||||  ||||||||||||| |||||||| | ||||||||||||||||||||||    
T  3867545 atcggcaaatattattaaacttcatcc-cgcaagacgtaaggtattgacgaaacaagatacaaatggtgccacatatagacggtacaccataac 3867453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 475 - 539
Target Start/End: Original strand, 41089431 - 41089494
Alignment:
Q  475 caaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  41089431 caaggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacaccataaccacctaaa 41089494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 443 - 539
Target Start/End: Complemental strand, 43482331 - 43482235
Alignment:
Q  443 gcaaatattattaaacatcatcctcgcaaaagcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||||||||| |||||| || | | |||||||||| |||||| |||||| |||| |||  ||||| ||||||||||||| |||||||||||    
T  43482331 gcaaatattattaaacgtcatccccgtagacgcaaggtatggacgaaataagatacaaatagtgctgcatacagacggtacaccacaaccacctaaa 43482235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 535
Target Start/End: Complemental strand, 34391614 - 34391516
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||| |||||||||||||||| |||||| ||||  | ||| |||||| ||||||||||||| ||||  || |||||||||||| |||||||||||||||    
T  34391614 aatcagcaaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataaccacc 34391516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 511
Target Start/End: Original strand, 35745481 - 35745555
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgca 511  Q
    |||| |||||||||||||||| |||||  || |||| |||||||||| ||||||||||||| |||||||||||||    
T  35745481 aatcagcaaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtgtcgca 35745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 539
Target Start/End: Original strand, 3419344 - 3419407
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||| ||||||||||||| ||| | || ||||||  ||||||||||||||||||||||||    
T  3419344 gcaaggtatggacgaaacaagatacaaacgttgccgcata--gacggtacaccataaccacctaaa 3419407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 538
Target Start/End: Original strand, 48161690 - 48161790
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaa-aagcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||| |||||||||||||||| ||||||  |||| |  |||| |||| ||| ||||| ||| |||| ||| ||||||||||||| |||||||||||||||    
T  48161690 aatcagcaaatattattaaacgtcatccctgcaagacacaagatatggacg-aacaaaatacaaatagtgccgcatatagacggcacaccataaccacct 48161788  T
Q  537 aa 538  Q
    ||    
T  48161789 aa 48161790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 497
Target Start/End: Original strand, 40726140 - 40726200
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaa-aagcaaggtatgaacgaaacaagata 497  Q
    ||||||||||||||||||||  |||||| ||||| | |||||||||| |||||||||||||    
T  40726140 aatcggcaaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaacaagata 40726200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 534
Target Start/End: Original strand, 11378772 - 11378866
Alignment:
Q  440 tcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccac 534  Q
    |||||||||||||||||||  || || ||||| | |||||||||| |||||  |||||| | ||| || |||||||| ||||||||||||||||||    
T  11378772 tcggcaaatattattaaacgccaaccccgcaagacgcaaggtatggacgaat-aagatacagatgatgccgcatataaacggtacaccataaccac 11378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 40726202 - 40726256
Alignment:
Q  485 acgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||||||| ||| ||||| ||   ||||||||||||||||||||||||||||||    
T  40726202 acgaaacaaaatacaaatgatgctacatatagacggtacaccataaccacctaaa 40726256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 437 - 539
Target Start/End: Original strand, 31584688 - 31584790
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  31584688 gaatcggcaaatattattaaacaccatcctcgcaagacgcaaggtatga-cgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacc 31584786  T
Q  536 taaa 539  Q
    ||||    
T  31584787 taaa 31584790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 30685573 - 30685675
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||| |||||| ||||| | |||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  30685573 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 30685672  T
Q  537 aaa 539  Q
    |||    
T  30685673 aaa 30685675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 7002619 - 7002517
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||||| ||| |||| |||||||| |||||||||||||||||| |    
T  7002619 aatcggcaaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataaccactt 7002520  T
Q  537 aaa 539  Q
    |||    
T  7002519 aaa 7002517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 445 - 535
Target Start/End: Original strand, 46814121 - 46814212
Alignment:
Q  445 aaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||||||||||  ||||||||||| | | |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  46814121 aaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 46814212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 40216155 - 40216257
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||| |||||||||||||||| |||||||||||| | || || |||| ||||| ||||||| |||||||| ||||||||||||||||| |||||||||||    
T  40216155 aatcagcaaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatatagacggtacatcataaccacct 40216254  T
Q  537 aaa 539  Q
    |||    
T  40216255 aaa 40216257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 438 - 534
Target Start/End: Complemental strand, 14320755 - 14320658
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccac 534  Q
    ||||||||||||||||||||| |||||| | ||| | |||||||||| || |||| | ||| ||||||||||||||||||||||||||||||||||||    
T  14320755 aatcggcaaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataaccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 437 - 539
Target Start/End: Original strand, 24449579 - 24449681
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||| |||||||||||||||||  ||||| ||||| | |||||||||| ||||||||||||| ||||||||  ||||||||||||||||||||||||||     
T  24449579 gaattggcaaatattattaaacgccatcc-cgcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccaca 24449677  T
Q  536 taaa 539  Q
    ||||    
T  24449678 taaa 24449681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 6804969 - 6804868
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||| ||||||||||||||   |||| ||||| | |||||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||||    
T  6804969 aatcggtaaatattattaaacgctatccccgcaagacgcaaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 6804871  T
Q  537 aaa 539  Q
    |||    
T  6804870 aaa 6804868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 444 - 532
Target Start/End: Original strand, 27031496 - 27031585
Alignment:
Q  444 caaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacc 532  Q
    ||||||||||||||| |||||||||||| | ||||| |||| ||| ||||| |||||||||||| |||||||| ||||||||||||||||    
T  27031496 caaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatatatacggtacaccataacc 27031585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 539
Target Start/End: Original strand, 24684141 - 24684243
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||||||||||||||| |  ||||||  |||| | ||||||||||||| |||||||||| |||||||| | ||||||||||||||||||||| ||||    
T  24684141 gaatcggcaaatattattatatgtcatccctgcaagatgcaaggtatgaac-aaacaagatacaaatggtgccacatatagacggtacaccataatcacc 24684239  T
Q  536 taaa 539  Q
    ||||    
T  24684240 taaa 24684243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 5459555 - 5459490
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||| ||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||    
T  5459555 gcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacctaaa 5459490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 539
Target Start/End: Original strand, 5389109 - 5389174
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||| |||||| |||||| |||||||| ||||||||||||| |||| |||||||||||||    
T  5389109 gcaaggtatggacgaaataagatacaaatggtgccgcatatagacggcacactataaccacctaaa 5389174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 535
Target Start/End: Complemental strand, 24659313 - 24659264
Alignment:
Q  486 cgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  24659313 cgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 24659264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 41920890 - 41920787
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||| ||||||||||||||| |||||  ||||| | | |||||||| |||||| || ||| |||| |||  |||||||||||||||||| ||||||||    
T  41920890 gaatcgacaaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacaccgtaaccacc 41920791  T
Q  536 taaa 539  Q
    ||||    
T  41920790 taaa 41920787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 46692519 - 46692570
Alignment:
Q  488 aaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||||||||    
T  46692519 aaacaagataaaaatggtgccgcataaagacggtacaccataaccacctaaa 46692570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 2392152 - 2392254
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||| |||||||||||||| |||||| ||||| | |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  2392152 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2392251  T
Q  537 aaa 539  Q
    |||    
T  2392252 aaa 2392254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 2393915 - 2394017
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||| |||||||||||||| |||||| ||||| | |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  2393915 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2394014  T
Q  537 aaa 539  Q
    |||    
T  2394015 aaa 2394017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 45164285 - 45164183
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||||| |||| ||||| | |||||||||| || |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  45164285 aatcggcaaatattattaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 45164186  T
Q  537 aaa 539  Q
    |||    
T  45164185 aaa 45164183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 31483313 - 31483210
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||||||||||||||||||| ||||| | ||| | ||||||||||||| |||||||||| ||||||||  |||||||||||||||||||||||||||    
T  31483313 gaatcggcaaatattattaaacaccatccccacaagacgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataaccacc 31483214  T
Q  536 taaa 539  Q
    ||||    
T  31483213 taaa 31483210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 437 - 538
Target Start/End: Original strand, 34475406 - 34475508
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||||| |||||||||||| |||||| ||||| | ||| |||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||    
T  34475406 gaatcggcacatattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataaccacc 34475505  T
Q  536 taa 538  Q
    |||    
T  34475506 taa 34475508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 438 - 538
Target Start/End: Complemental strand, 21343779 - 21343678
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaag-caaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||| ||||||||||||||| ||||||  |||| |  ||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  21343779 aatcgacaaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacct 21343680  T
Q  537 aa 538  Q
    ||    
T  21343679 aa 21343678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 437 - 533
Target Start/End: Original strand, 50305222 - 50305319
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacca 533  Q
    ||||| ||||||||||||||||  ||| | ||||| | |||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  50305222 gaatcagcaaatattattaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacaccataacca 50305319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 444 - 535
Target Start/End: Original strand, 40023224 - 40023316
Alignment:
Q  444 caaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||||||||||||||||||| ||||| | |||  ||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  40023224 caaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccacc 40023316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 47236131 - 47236028
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||| ||||||||||||||||  |||||  |||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||||| |    
T  47236131 gaatcagcaaatattattaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataaccatc 47236032  T
Q  536 taaa 539  Q
    ||||    
T  47236031 taaa 47236028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 19176938 - 19176836
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||| |||| |  |||| | |||| ||||| |||||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  19176938 aatcggcaaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcatatagacggtacaccataacgacct 19176839  T
Q  537 aaa 539  Q
    |||    
T  19176838 aaa 19176836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 535
Target Start/End: Original strand, 23327997 - 23328095
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||| ||||||||||||||||   ||||  |||| | |||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  23327997 aatcagcaaatattattaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcatatatacggtacaccataaccacc 23328095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 539
Target Start/End: Original strand, 30352125 - 30352190
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||    
T  30352125 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacctaaa 30352190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 43012772 - 43012707
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||| |||||||||||||||||||    
T  43012772 gcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacctaaa 43012707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 445 - 539
Target Start/End: Complemental strand, 17551382 - 17551287
Alignment:
Q  445 aaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||||||| | ||||  |||| | ||| |||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||    
T  17551382 aaatattattaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataaccacctaaa 17551287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 438 - 532
Target Start/End: Original strand, 25506719 - 25506814
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaagc-aaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacc 532  Q
    ||||| |||||||||||||||||||||| ||||| | | ||| ||| ||| |||||| ||| |||||||| |||||||||||||||||||||||||    
T  25506719 aatcgacaaatattattaaacatcatccccgcaagacccaagatataaacaaaacaatatacaaatggtgccgcatatagacggtacaccataacc 25506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 45399177 - 45399119
Alignment:
Q  477 aggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  45399177 aggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacc 45399119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 475 - 539
Target Start/End: Original strand, 9583740 - 9583804
Alignment:
Q  475 caaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||||||  ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||    
T  9583740 caaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaa 9583804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 444 - 535
Target Start/End: Complemental strand, 50560070 - 50559978
Alignment:
Q  444 caaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||||||||||| |||||||||||| | ||||| |||| ||||||||||||| ||| | || |||| ||||||||| |||||||||||||    
T  50560070 caaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaaagatgccgcacatagacggtgcaccataaccacc 50559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 53248332 - 53248230
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||| ||||||||||||||| |||||| |||||   | |||||||| || |||||||||| ||||||||||||||||||   |||||||||||||| ||    
T  53248332 aatcgacaaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatataggttgtacaccataaccatct 53248233  T
Q  537 aaa 539  Q
    |||    
T  53248232 aaa 53248230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 4463734 - 4463831
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccac 534  Q
    ||||||||||||||||||||| ||| || | ||| | |||||  ||| ||||||||| | | |||||||| |||||||||||||| ||||||||||||    
T  4463734 aatcggcaaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatatagacggtgcaccataaccac 4463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 4306137 - 4306035
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||||||||||||||||||  |||||| || || | ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  4306137 gaatcggcaaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataaccacc 4306039  T
Q  536 taaa 539  Q
    ||||    
T  4306038 taaa 4306035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 30964870 - 30964767
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||| |||||||||||||||| |||||  |||| | |||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  30964870 gaatcgacaaatattattaaacaccatccctgcaagacgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacc 30964771  T
Q  536 taaa 539  Q
    ||||    
T  30964770 taaa 30964767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 35329440 - 35329337
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||||||||||||| |||||  ||||| ||||| | | |||||||| ||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  35329440 gaatcggcaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacc 35329341  T
Q  536 taaa 539  Q
    ||||    
T  35329340 taaa 35329337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 438 - 538
Target Start/End: Complemental strand, 7703118 - 7703018
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaag-caaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||| |||||| ||||| |  ||||||||| | |||| |||||| |||||||| |||||||||||||||||||||||||||||    
T  7703118 aatcggcaaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 7703020  T
Q  537 aa 538  Q
    ||    
T  7703019 aa 7703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 27555579 - 27555682
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctc-gcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||||||||||||||||||  ||||| | |||| | |||||||||| ||||||||||||| |||| ||| |||||||||| |||||||||||||||||    
T  27555579 aatcggcaaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacc 27555678  T
Q  536 taaa 539  Q
    ||||    
T  27555679 taaa 27555682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 454 - 539
Target Start/End: Complemental strand, 20465005 - 20464919
Alignment:
Q  454 taaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||| |||||||| ||| | |||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  20465005 taaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacaccataaccacctaaa 20464919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 443 - 535
Target Start/End: Original strand, 31050315 - 31050408
Alignment:
Q  443 gcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||||||||||||| || ||| ||||| | || | ||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  31050315 gcaaatattattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccacc 31050408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 46698428 - 46698525
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccac 534  Q
    |||| |||||||||||||||| ||||||  | || | ||||||||||  |||||||||||| |||||||| |||||||||||||||||||||||||||    
T  46698428 aatcagcaaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 442 - 534
Target Start/End: Complemental strand, 49528514 - 49528421
Alignment:
Q  442 ggcaaatattattaaacatcatcctcgcaaaagc-aaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccac 534  Q
    ||||||||| |||||||| || || |||||||   |||||||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  49528514 ggcaaatatcattaaacaccaaccccgcaaaacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaaccac 49528421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 2826214 - 2826118
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacc 532  Q
    ||||| |||||||||||||||| |||||   |||| | |||||||||| ||| ||||||||| |||||||| |||||||| ||||||||||||||||    
T  2826214 gaatcagcaaatattattaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatatacggtacaccataacc 2826118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 535
Target Start/End: Original strand, 52868800 - 52868859
Alignment:
Q  476 aaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||||||||||  |||||| |||||||||||| ||||||||||||||||||||||||    
T  52868800 aaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 8705789 - 8705891
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||| ||||||   ||| | || ||||||| ||||  || |||| ||||||||  ||||||||||||||||||||||||||||    
T  8705789 aatcggcaaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataaccacct 8705888  T
Q  537 aaa 539  Q
    |||    
T  8705889 aaa 8705891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 36689454 - 36689556
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||| |||||||||||||| | ||||  ||||| | || ||||||| |||||| |||||| ||||||| ||||||||||||||||||| |||||||| |    
T  36689454 aatcgacaaatattattaaataccatctccgcaagacgcgaggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataaccactt 36689553  T
Q  537 aaa 539  Q
    |||    
T  36689554 aaa 36689556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 539
Target Start/End: Original strand, 11281375 - 11281476
Alignment:
Q  439 atcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccaccta 537  Q
    |||||||||||||||| ||| |||||  | ||| | ||||| |||| |||||||| |||||||||||||  | |||||||||||| ||||||||||||||    
T  11281375 atcggcaaatattattgaacgtcatctccacaagacgcaagatatggacgaaacatgatataaatggtgctgtatatagacggtataccataaccaccta 11281474  T
Q  538 aa 539  Q
    ||    
T  11281475 aa 11281476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 444 - 532
Target Start/End: Original strand, 35341006 - 35341097
Alignment:
Q  444 caaatattattaaacatcatcctc--gcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacc 532  Q
    ||||||||||||||| |||||| |  |||| | |||| ||||| ||||||||||||| |||||||| | |||||||||||||||||||||||    
T  35341006 caaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 520
Target Start/End: Complemental strand, 9750198 - 9750116
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaagcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacgg 520  Q
    ||||| ||||||||||||||| |||||| ||||| |   |||| || ||||||||||||| |||||||| |||||||||||||    
T  9750198 aatcgacaaatattattaaacgtcatccccgcaagacgcaggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 503
Target Start/End: Original strand, 30167212 - 30167278
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaa-aagcaaggtatgaacgaaacaagatataaatg 503  Q
    ||||| ||||||||||||||| |||||||||||| | |||||||||| ||||||||||||| |||||    
T  30167212 aatcgacaaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatg 30167278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 539
Target Start/End: Complemental strand, 8255420 - 8255357
Alignment:
Q  476 aaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||| || |||| |||||||| ||||| || ||||||||||||||||| ||||||||||||||    
T  8255420 aaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacctaaa 8255357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 539
Target Start/End: Complemental strand, 8268838 - 8268775
Alignment:
Q  476 aaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||| || |||| |||||||| ||||| || ||||||||||||||||| ||||||||||||||    
T  8268838 aaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacctaaa 8268775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 439 - 532
Target Start/End: Complemental strand, 19349 - 19255
Alignment:
Q  439 atcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacc 532  Q
    |||||||||||||||||||| |||||||||||| | ||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  19349 atcggcaaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 19255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 12897925 - 12898027
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||| |||||| ||||| | ||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  12897925 aatcggcaaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacct 12898024  T
Q  537 aaa 539  Q
    |||    
T  12898025 aaa 12898027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 31207011 - 31207113
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||||||||||||||||||  ||||||||||| | |||||||||| ||||||||||||| |||||||| || ||||| ||||||||||||||||||||    
T  31207011 aatcggcaaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacct 31207110  T
Q  537 aaa 539  Q
    |||    
T  31207111 aaa 31207113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 441 - 532
Target Start/End: Original strand, 35815896 - 35815988
Alignment:
Q  441 cggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacc 532  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||    
T  35815896 cggcaaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35815988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 22774053 - 22773951
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||||||||||||||||||  ||||| ||||| | |||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||| ||    
T  22774053 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatatagacggtacaccataaccatct 22773954  T
Q  537 aaa 539  Q
    |||    
T  22773953 aaa 22773951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 442 - 539
Target Start/End: Original strand, 16457128 - 16457226
Alignment:
Q  442 ggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||||||||||||||| ||||||  |||| | | |||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  16457128 ggcaaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacctaaa 16457226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 20138858 - 20138756
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||| ||||||||||||||  ||||| ||||| | |||| ||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  20138858 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 20138759  T
Q  537 aaa 539  Q
    |||    
T  20138758 aaa 20138756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 32065934 - 32066035
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||||||||||||||||||  ||||  ||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  32065934 aatcggcaaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca-cataaccacct 32066032  T
Q  537 aaa 539  Q
    |||    
T  32066033 aaa 32066035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 437 - 535
Target Start/End: Original strand, 15821025 - 15821123
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||| |||||||||||||||| ||||||| |||| | |||||||||| ||| ||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  15821025 gaatcagcaaatattattaaacgtcatcct-gcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatagacggtataccataaccacc 15821123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 9519938 - 9519836
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||| |||||||||||||||| |||||   ||| | |||||||||| ||||||||||||| |||||||| ||||||||||| ||||| |||||||||||    
T  9519938 aatcgacaaatattattaaacaccatccctacaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataaccacct 9519839  T
Q  537 aaa 539  Q
    |||    
T  9519838 aaa 9519836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 442 - 539
Target Start/End: Original strand, 37986508 - 37986606
Alignment:
Q  442 ggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||||||||||||||  |||||| ||||| | |||||| | | ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||    
T  37986508 ggcaaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaa 37986606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 475 - 539
Target Start/End: Original strand, 41893093 - 41893156
Alignment:
Q  475 caaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||    
T  41893093 caaggtatgaacgaaaaaa-atacaaatggtgtcgcatatagacggtacaccataaccacctaaa 41893156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 438 - 535
Target Start/End: Complemental strand, 3584170 - 3584071
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaa-gatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||| ||||||||||||||||  ||||| | ||| | || ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  3584170 aatcagcaaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccataaccacc 3584071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 24995044 - 24995146
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||| |||||||||||| |||  ||||| || || | |||||||||| ||||||||||||| |||||||| ||| ||||||| |||||||||||||||||    
T  24995044 aatcagcaaatattattgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataaccacct 24995143  T
Q  537 aaa 539  Q
    |||    
T  24995144 aaa 24995146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 36631254 - 36631153
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||| ||||||||||| ||  |||||  |||| | |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  36631254 aatcggaaaatattattatacgccatccctgcaagacgcaaggtatgaa-gaaacaagatacaaatggtgccgcatatagacggtacaccataatcacct 36631156  T
Q  537 aaa 539  Q
    |||    
T  36631155 aaa 36631153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 27889241 - 27889176
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||  ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  27889241 gcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaa 27889176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 27947899 - 27947834
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||  ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  27947899 gcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaa 27947834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 539
Target Start/End: Complemental strand, 35821685 - 35821585
Alignment:
Q  439 atcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccaccta 537  Q
    ||||||||||||||||||||  ||||  ||||| | |||||| ||| |||||||| |||| ||||| || ||||||||||||||||||||||||||| ||    
T  35821685 atcggcaaatattattaaacgccatctccgcaagacgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataaccactta 35821587  T
Q  538 aa 539  Q
    ||    
T  35821586 aa 35821585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 9659535 - 9659473
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaa-aagcaaggtatgaacgaaacaagatat 498  Q
    |||||||||||||||||||||| |||||| ||||| | |||||||||| ||||||||||||||    
T  9659535 gaatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatat 9659473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 535
Target Start/End: Original strand, 10837923 - 10837984
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||||| |||||| ||| |||||  |||| ||| ||||||||||||||||||||||||||||    
T  10837923 gcaaggaatgaacaaaataagatgcaaatcgtgccgcatatagacggtacaccataaccacc 10837984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 539
Target Start/End: Original strand, 34388711 - 34388758
Alignment:
Q  492 aagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||| |||| |||  |||||||||||||||||||||||||||||||    
T  34388711 aagatacaaatagtgctgcatatagacggtacaccataaccacctaaa 34388758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 530
Target Start/End: Complemental strand, 13538418 - 13538324
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataa 530  Q
    ||||| ||||||||||||||||  ||||  | ||| | |||||||||| |||||| || ||| |||||||  ||||||||||||||||| |||||    
T  13538418 gaatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13538324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 530
Target Start/End: Original strand, 13686056 - 13686150
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataa 530  Q
    ||||| ||||||||||||||||  ||||  | ||| | |||||||||| |||||| || ||| |||||||  ||||||||||||||||| |||||    
T  13686056 gaatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 524
Target Start/End: Original strand, 38577477 - 38577522
Alignment:
Q  479 gtatgaacgaaacaagatataaatggtgtcgcatatagacggtaca 524  Q
    ||||||||||||||| ||| ||||| || |||||||||||||||||    
T  38577477 gtatgaacgaaacaatatacaaatgatgccgcatatagacggtaca 38577522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 438 - 536
Target Start/End: Original strand, 39338510 - 39338609
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||||||||||||||||||  |||| ||| || | |||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  39338510 aatcggcaaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 39338609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 535
Target Start/End: Original strand, 14106172 - 14106269
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||| ||||||||||||||||  ||||||||||| | ||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  14106172 aatcagcaaatattattaaacgccatcctcgcaagacgcagggtatga-cgaaacaagatagaaatggtgccgcatatagacggtacaccataaccacc 14106269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 531
Target Start/End: Original strand, 14436916 - 14437010
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataac 531  Q
    |||| ||||||||||||||||  ||||| ||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  14436916 aatcagcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 14437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 43816095 - 43816191
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacc 532  Q
    |||||||||||||||||||||| |||| | ||||||| |||||||||| |||||||||  || ||||| || |||||||||||||||||||||||||    
T  43816095 gaatcggcaaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacaccataacc 43816191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 5254685 - 5254590
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacc 532  Q
    ||||| |||||||||||||||| |||||||||||| | | |||||||| |||||| | |||| |||||||| |||||||||||||||||||||||||    
T  5254685 gaatcagcaaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaata-gatacaaatggtgccgcatatagacggtacaccataacc 5254590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 387608 - 387506
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||| || |||||||||||| |||||  |||||   ||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| |    
T  387608 aatcgacagatattattaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccactt 387509  T
Q  537 aaa 539  Q
    |||    
T  387508 aaa 387506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 10524529 - 10524428
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||||||||||||||||||  || ||| |||| | |||||||||| ||||||||| ||| ||||||||  ||||||||| ||||||||||||||||||    
T  10524529 aatcggcaaatattattaaacgccaccct-gcaagacgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataaccacct 10524431  T
Q  537 aaa 539  Q
    |||    
T  10524430 aaa 10524428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 444 - 532
Target Start/End: Original strand, 43248882 - 43248971
Alignment:
Q  444 caaatattattaaacatcatcctcgcaaaag-caaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacc 532  Q
    ||||||||||||||| |||||||| ||| |  ||||||||| |||||||||||||||||||| | ||||||||||||||| | |||||||    
T  43248882 caaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacggtatatcataacc 43248971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 437 - 534
Target Start/End: Complemental strand, 3745774 - 3745676
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccac 534  Q
    |||||||||||||||||||||  |||||| |  || | |||||||||| ||||||||||||| ||||||||  ||||||||| |||||| |||||||||    
T  3745774 gaatcggcaaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagatggtacatcataaccac 3745676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 535
Target Start/End: Complemental strand, 7461107 - 7461010
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||| |||||||||||||||| |||||| ||||| | |||  |||||| |||||||| ||| ||||||||| |||||||||| ||||||||||||||||    
T  7461107 aatcagcaaatattattaaacgtcatccccgcaagacgcagagtatga-cgaaacaaaatacaaatggtgttgcatatagacagtacaccataaccacc 7461010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 538
Target Start/End: Complemental strand, 14405591 - 14405530
Alignment:
Q  476 aaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaa 538  Q
    |||||||||||||| ||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  14405591 aaggtatgaacgaa-caagatacaaatggtgctgcatatagacggtacaccataaccacctaa 14405530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 444 - 536
Target Start/End: Original strand, 41877207 - 41877300
Alignment:
Q  444 caaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||||||||||||  ||||| ||||| | ||||| |||| ||||||||| ||| |||||||  || ||||||||||||||||||||||||||    
T  41877207 caaatattattaaactccatccccgcaagacgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacct 41877300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 438 - 535
Target Start/End: Complemental strand, 7874709 - 7874610
Alignment:
Q  438 aatcggcaaatattattaaa-catcatcctcgcaaaag-caaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    |||| ||||||||||||||| |  ||||||||||| |  ||||||||  || |||||||||| |||||| | ||||||||||||||||||||||||||||    
T  7874709 aatcagcaaatattattaaaacgccatcctcgcaagacacaaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacaccataaccacc 7874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 535
Target Start/End: Original strand, 17116553 - 17116635
Alignment:
Q  454 taaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||| |||||| ||||| | |||||||||| |||| |||||||| ||||| || |||||||||||||||||| |||||||||    
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataaccacc 17116635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 445 - 533
Target Start/End: Original strand, 13512495 - 13512584
Alignment:
Q  445 aaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataacca 533  Q
    |||||||||||||| |||| | ||||| | |||| ||||| ||||||||| ||| ||||| || ||||||||||||||||| ||||||||    
T  13512495 aaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaacaaaatacaaatgatgccgcatatagacggtacaacataacca 13512584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 534
Target Start/End: Original strand, 45311452 - 45311550
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccac 534  Q
    |||||||| |||||||||||||  || || ||||| | |||||| | | ||||||||||||| |||||||| | |||||| |||| |||||||||||||    
T  45311452 gaatcggccaatattattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgccacatatatacggaacaccataaccac 45311550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 505
Target Start/End: Original strand, 25280963 - 25281032
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggt 505  Q
    ||||||| |||||||||||||| |||||| | ||| | ||| |||||| |||||||||||||||||||||    
T  25280963 gaatcggaaaatattattaaacgtcatccccacaagacgcagggtatggacgaaacaagatataaatggt 25281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 514
Target Start/End: Complemental strand, 15457893 - 15457817
Alignment:
Q  439 atcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatat 514  Q
    ||||||||||| |||||||| |||||| ||||| | ||| | |||| ||||||||||||| |||||||| |||||||    
T  15457893 atcggcaaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 7455676 - 7455601
Alignment:
Q  445 aaatattattaaacatcatcctcgcaaaagcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacgg 520  Q
    ||||| |||||||| |||||| ||||| |   |||||||||||||| |||||| |||||||| |||| ||||||||    
T  7455676 aaataatattaaacgtcatccccgcaagacgcaggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 3254389 - 3254287
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    ||||||||||||||||||||| |||||| ||||| | |||||||||| ||||||||||||| |||||||| || |||||||  |||||||||| ||||||    
T  3254389 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacaccatagccacct 3254290  T
Q  537 aaa 539  Q
    |||    
T  3254289 aaa 3254287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 10542263 - 10542161
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacc 535  Q
    ||||||| |||||||||||| |  ||||| ||||| | ||||| |||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||    
T  10542263 gaatcggaaaatattattaagcgccatcc-cgcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataaccacc 10542165  T
Q  536 taaa 539  Q
    ||||    
T  10542164 taaa 10542161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 15944431 - 15944329
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||||||||||||||||||||  |||||  | || | |||||||||| ||  || |||||| |||||||||||||||||||||||||||||||| |||||    
T  15944431 aatcggcaaatattattaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacaccataaacacct 15944332  T
Q  537 aaa 539  Q
    |||    
T  15944331 aaa 15944329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 442 - 539
Target Start/End: Complemental strand, 3117922 - 3117824
Alignment:
Q  442 ggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||||||||||||||| |||| |  |||| | | |||||||| |||||| |||||| ||||||||  ||||||||||| |||||||||||||||||||    
T  3117922 ggcaaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataaccacctaaa 3117824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 534
Target Start/End: Original strand, 33697789 - 33697843
Alignment:
Q  480 tatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccac 534  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 521
Target Start/End: Original strand, 15132488 - 15132573
Alignment:
Q  437 gaatcggcaaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggt 521  Q
    ||||| ||||||||||||||||  |||| |||||| | | |||||||| || |||||||||| ||||| || || |||||||||||    
T  15132488 gaatcagcaaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacggt 15132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 539
Target Start/End: Original strand, 2359 - 2424
Alignment:
Q  474 gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    |||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||||||    
T  2359 gcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacctaaa 2424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 539
Target Start/End: Complemental strand, 6131 - 6035
Alignment:
Q  444 caaatattattaaacatcatcctcgcaaaa-gcaaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacctaaa 539  Q
    ||||||||||||||| |||||| ||||| | ||||| ||||||||| |||||||| |||||||| || ||||||||| |||| ||||||||||||||    
T  6131 caaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatatagacgttacatcataaccacctaaa 6035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 48767 - 48665
Alignment:
Q  438 aatcggcaaatattattaaacatcatcctcgcaaaag-caaggtatgaacgaaacaagatataaatggtgtcgcatatagacggtacaccataaccacct 536  Q
    |||| |||||||||||| ||| || ||| ||||| |  |||| |||| || |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  48767 aatccgcaaatattattcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 48668  T
Q  537 aaa 539  Q
    |||    
T  48667 aaa 48665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University