View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11805_high_12 (Length: 232)

Name: NF11805_high_12
Description: NF11805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11805_high_12
NF11805_high_12
[»] chr2 (2 HSPs)
chr2 (19-222)||(17895780-17895983)
chr2 (62-133)||(43585945-43586016)
[»] chr6 (2 HSPs)
chr6 (62-152)||(785384-785474)
chr6 (68-128)||(1334714-1334774)
[»] chr5 (2 HSPs)
chr5 (61-120)||(7621169-7621228)
chr5 (63-99)||(9031879-9031915)
[»] chr4 (2 HSPs)
chr4 (62-152)||(37496744-37496834)
chr4 (65-133)||(13307925-13307993)
[»] chr8 (1 HSPs)
chr8 (61-98)||(10497744-10497781)
[»] chr7 (1 HSPs)
chr7 (60-133)||(25956493-25956565)
[»] chr1 (1 HSPs)
chr1 (65-129)||(16925683-16925747)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 17895780 - 17895983
Alignment:
Q  19 agtttccaaggcaagaatggggtctgtctcgacaacttgaaggctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgt 118  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  17895780 agtttccaaggcaagcttggggtctgtctcgacaacttgaaggctctgttgcatggacacttttgattgaaggcgtgtcctaatatccgacacgtatcgt 17895879  T
Q  119 gttcgacaccaacaccacatcggcacttgtgattgaatcatctcattttcttaaaattttatccgtacgaacgtatcagtgtcgtgttcagtgtctgtgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||     |||||||||||||||||||||||||||     
T  17895880 gttcgacaccaacaccacatcggcacttgtgattgaatcatctcattttctcaaaattttatcggtataggtgtatcagtgtcgtgttcagtgtctgtga 17895979  T
Q  219 tcct 222  Q
    ||||    
T  17895980 tcct 17895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 43585945 - 43586016
Alignment:
Q  62 ctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacac 133  Q
    ||||||||||||||||||| |||||||||| ||||||   | || |||||||||||||| ||||||| ||||    
T  43585945 ctctgttgcacgaacacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacac 43586016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 785384 - 785474
Alignment:
Q  62 ctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacaccacatcggcacttgtgatt 152  Q
    |||||||||||| |||||| |||||||||| |||||||  | ||||||||  ||| ||||||||||| |||| ||| || |||||||||||    
T  785384 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatgttcgacaccgacacgacaccgacacttgtgatt 785474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 1334774 - 1334714
Alignment:
Q  68 tgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacacc 128  Q
    |||||| |||||| |||||||||| |||||||  | | ||||||| |||||||||||||||    
T  1334774 tgcacggacacttctgattgaaggtgtgtcctggtgttcgacacgcatcgtgttcgacacc 1334714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 7621169 - 7621228
Alignment:
Q  61 gctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgt 120  Q
    ||||||||||||| |||||| ||||||||| |||||||| || ||||| | |||||||||    
T  7621169 gctctgttgcacggacacttctgattgaagacgtgtcctgatgtccgataagtatcgtgt 7621228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 9031879 - 9031915
Alignment:
Q  63 tctgttgcacgaacacttttgattgaaggcgtgtcct 99  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  9031879 tctgttgcacggacacttctgattgaaggcgtgtcct 9031915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 37496834 - 37496744
Alignment:
Q  62 ctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacaccacatcggcacttgtgatt 152  Q
    |||||||||||| |||||| |||||||||||||||||   | ||||||| || |||||| || || | |||| ||| || |||||||||||    
T  37496834 ctctgttgcacggacacttatgattgaaggcgtgtcccggtgtccgacatgtgtcgtgtccggcaacgacacaacaccgacacttgtgatt 37496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 13307993 - 13307925
Alignment:
Q  65 tgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacac 133  Q
    |||||||| ||||||| ||||||||||| |||| |  | || ||||||| |||||| ||||||||||||    
T  13307993 tgttgcaccaacacttctgattgaaggcatgtcatggtgtctgacacgtgtcgtgtccgacaccaacac 13307925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 10497744 - 10497781
Alignment:
Q  61 gctctgttgcacgaacacttttgattgaaggcgtgtcc 98  Q
    |||||||||||||||||| | |||||||||||||||||    
T  10497744 gctctgttgcacgaacacctctgattgaaggcgtgtcc 10497781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 25956565 - 25956493
Alignment:
Q  60 ggctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacac 133  Q
    |||||| ||||||| |||||| |||||||||||||||||   | ||||||| ||||||||| ||||||| ||||    
T  25956565 ggctctattgcacggacacttctgattgaaggcgtgtcc-cgtgtccgacatgtatcgtgtccgacaccgacac 25956493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 16925747 - 16925683
Alignment:
Q  65 tgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacacca 129  Q
    ||||||| | |||||||| |||||||| |||| ||  | ||||||||||||||||| ||||||||    
T  16925747 tgttgcatggacacttttaattgaaggagtgttctggtgtccgacacgtatcgtgtgcgacacca 16925683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University