View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11805_high_14 (Length: 227)
Name: NF11805_high_14
Description: NF11805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11805_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 202737 - 202858
Alignment:
| Q |
87 |
ttgattctaaattaaggaaggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggatta |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
202737 |
ttgattctaaattaaggaaggaaatatgtttgattctaaattctaaagttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggatta |
202836 |
T |
|
| Q |
187 |
atggagactttatcattttcat |
208 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
202837 |
atggagactttatcattttcat |
202858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 202666 - 202700
Alignment:
| Q |
19 |
gattttgaatattagtttgattctgtgtgtaagag |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
202666 |
gattttgaatattagtttgattctgtgtgtaagag |
202700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 6908223 - 6908120
Alignment:
| Q |
105 |
aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggattaatggagactttatcattt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6908223 |
aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggattaatggagactttatcattt |
6908124 |
T |
|
| Q |
205 |
tcat |
208 |
Q |
| |
|
|||| |
|
|
| T |
6908123 |
tcat |
6908120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 6908321 - 6908287
Alignment:
| Q |
19 |
gattttgaatattagtttgattctgtgtgtaagag |
53 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
6908321 |
gattttgaatattagtttgattatgtgtgtaagag |
6908287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 6908253 - 6908225
Alignment:
| Q |
87 |
ttgattctaaattaaggaaggaaatatgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6908253 |
ttgattctaaattaaggaaggaaatatgt |
6908225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University