View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11805_high_4 (Length: 322)
Name: NF11805_high_4
Description: NF11805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11805_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 29207659 - 29207953
Alignment:
| Q |
20 |
gaggtagtgatttttatgaccattctgaaacatccagcagtggttcaggaagcgattcattagatgaagatgtaagaataatttttaatttgattttctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207659 |
gaggtagtgatttttatgaccattctgaaacatccagcagtggttcaggaagcgattcattagatgaagatgtaagaataatttttaatttgattttctt |
29207758 |
T |
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| Q |
120 |
gattttaagtatatgataatgtgttttaatatagtttgnnnnnnnngatttcacctcatgtcatttttctgtcagtcctcttttaccatgatttttctga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207759 |
gattttaagtatatgataatgtgttttaatatagtttgaaaaaaaagatttcacctcatgtcatttttctgtcagtcctcttttaccatgatttttctga |
29207858 |
T |
|
| Q |
220 |
caatatctggttaagcagggtgatgaatgcgctagtttaacagaattcggtaattcagctcttggcgtgcagtactcgtttagtaacttctcatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207859 |
caatatctggttaagcagggtgatgaatgcgctagtttaacagaattcggtaattcagctcttggcgtgcagtactcgtttagtaacttctcatt |
29207953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 166 - 311
Target Start/End: Complemental strand, 12643880 - 12643735
Alignment:
| Q |
166 |
gatttcacctcatgtcatttttctgtcagtcctcttttaccatgatttttctgacaatatctggttaagcagggtgatgaatgcgctagtttaacagaat |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12643880 |
gatttcacctcatgtcatttttctgtcagtcctcttttaccatgatttttctgacgatatctggttaagcagggcgatgaatgcgctagtttaacagaat |
12643781 |
T |
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| Q |
266 |
tcggtaattcagctcttggcgtgcagtactcgtttagtaacttctc |
311 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12643780 |
tcagtaattcagctcttggcgtgcagtactcgtttagtaacttctc |
12643735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 12644143 - 12644018
Alignment:
| Q |
20 |
gaggtagtgatttttatgaccattctgaaacatccagcagtggttcaggaagcgattcattagatgaagatgtaagaataatttttaatttgattttctt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12644143 |
gaggtagtgatttttatgaccattctgaaacatccagcagtggttcaggaagcgattcattagatgaagatgtaagaataatttttaattttattttctt |
12644044 |
T |
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| Q |
120 |
gattttaagtatatgataatgtgttt |
145 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12644043 |
gattttaagtatatgataatgtgttt |
12644018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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