View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11805_low_11 (Length: 298)
Name: NF11805_low_11
Description: NF11805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11805_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 43 - 290
Target Start/End: Complemental strand, 27572506 - 27572257
Alignment:
| Q |
43 |
ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca |
142 |
Q |
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| T |
27572506 |
ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca |
27572407 |
T |
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| Q |
143 |
tatattgcattatttcttatagaataatgttaatgattctcgtaaatgttgcttctattaaacccatttgtgttagcatggtgttattgacttggaaatt |
242 |
Q |
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| T |
27572406 |
tatattgcattattgcttatagaataatgttaatgattctcgtaaatgttgcttctattaaactcatttgtgttagcatggtggtattgacttggaagtt |
27572307 |
T |
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| Q |
243 |
gggagtgtgttcatcctcaatcctcaagg--tcaggttcgattatctctg |
290 |
Q |
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| T |
27572306 |
gggagtgtgttcatcctaaatcctcaaggtctcaggttcgattttctctg |
27572257 |
T |
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